View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_low_8 (Length: 460)
Name: NF20021_low_8
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 39904715 - 39904286
Alignment:
| Q |
13 |
aaaatgccgagtgttttcctctccatgaccaaaatcaatagagtgtgagtgtggtagtggtttaatcagaaaagtgaattgtataaatatggctcttata |
112 |
Q |
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| T |
39904715 |
aaaatgccgagtgttttcctctccatgaccaaaatcaatagagtgtgagtgtggtagtggtttaatcagaaaagtgaattgtataaatatggctcttata |
39904616 |
T |
|
| Q |
113 |
tatgatgttcttatatataatgaattgcatggaaacatacatatatgacgtgttggagccgcagatacagaagcaggtgagtgttcacagatggtagtac |
212 |
Q |
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| T |
39904615 |
tgtgatgttcttatatataatgaattgcatggaaacatacatatatgacgtgttggagccgcagatacagaagcaggtgagtgttcacagatggtagtac |
39904516 |
T |
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| Q |
213 |
cagtttgatcaaataggttggttaacatgcaaagctgcaacgtgtgtatacgtttctgagctgccaattaacaataaccaccaccatctgttgatgtttc |
312 |
Q |
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| T |
39904515 |
cagtttgatcaaataggttggttaacatgcaaagctgcaacgtgtgaatacgtttctgagctgccaattaacaataaccaccaccatctgttgatgtttc |
39904416 |
T |
|
| Q |
313 |
ttttgcttttaccaccactttcaatttctttaattaccataataaccagtttaaatactatatattgaagatgaggtgtatgagtaagttttgcg--aaa |
410 |
Q |
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| T |
39904415 |
ttttgcttttaccaccactttcaatttct----ttaccataataaccagtttaaatactatatattgaagatgaggtgtatgagtaagttttgcgaaaaa |
39904320 |
T |
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| Q |
411 |
gctgcatactactacaatctttgggagtaacttg |
444 |
Q |
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| T |
39904319 |
gctgcatactactacaatctttgggagtaacttg |
39904286 |
T |
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