View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20022_high_11 (Length: 438)
Name: NF20022_high_11
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 36926137 - 36925732
Alignment:
| Q |
1 |
agtctgcaacgtggacgatgccagagcaaataaagtattttcaaattgctaaaccctacccagtccaaaccaaaattctcattagcattcctcagctgat |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
36926137 |
agtctgcaacgtggatgacgccagagcaaataaaatattttcaaattgctaaaccctacccagtccaaaccaaggttctcattagcattcctcagctggt |
36926038 |
T |
|
| Q |
101 |
catccatgtattgcgtgtcaatcttcaaagtcatttctacgacaaatgtcacacaaaagaatttgggtttgagctgcacttaggtttctacattgaaacc |
200 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36926037 |
catccaggtattgcgtgccaatcttcaaagtcatttctacaa-----gtcacacaaaagaatttgggtttgagctgcaattaggtttctacattgaaacc |
36925943 |
T |
|
| Q |
201 |
actatatagcacctaaattttaaaaagcaaacaatatcagaaaaagatattgttgagttttgcagcaatactatttatttcttcag-tttgtgttatatg |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
36925942 |
actata--gcacctaaattttaaaaagcaaacaatatcagaaaaagatattgttgagttttgcagcaatattatttatttcttcagttttgtgttatata |
36925845 |
T |
|
| Q |
300 |
taacgatgcaaggaagacagttactacagtttgcaacactaaaaaagaatttgtaaataaagtcagaaaagattattagttttggcatgattttgaatcg |
399 |
Q |
| |
|
|||| | || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36925844 |
taacact-----------agatgcaacagtttgcaacactaaaaaagaatttgtaaataaagtcagaaaagattattagtttcggcatgattttgaatcg |
36925756 |
T |
|
| Q |
400 |
tatactgcattataggatgtatgt |
423 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36925755 |
tatactgcattataggatgtatgt |
36925732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 409
Target Start/End: Complemental strand, 50435680 - 50435576
Alignment:
| Q |
304 |
gatgcaaggaagacagttactacagtttgcaacactaaaaaagaatttgtaaataaagtcagaaaagattattagttttggcatgattttgaatcgtata |
403 |
Q |
| |
|
|||||||||||| ||||| |||| |||||| ||| |||||||| |||||||||||||||||||||| |||||||| | ||||| |||||||| ||||| |
|
|
| T |
50435680 |
gatgcaaggaagggagttattacaatttgca-caccaaaaaagattttgtaaataaagtcagaaaaggttattagtctcagcatggttttgaattgtata |
50435582 |
T |
|
| Q |
404 |
ctgcat |
409 |
Q |
| |
|
|||||| |
|
|
| T |
50435581 |
ctgcat |
50435576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University