View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_high_15 (Length: 347)
Name: NF20022_high_15
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 419496 - 419807
Alignment:
| Q |
9 |
tgtcgaagaaaatccggtggagatacggccacagtcacagaagatgtagattgagttccagactccggaggggatccttgaaaataaaataaaaatcatt |
108 |
Q |
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| T |
419496 |
tgtcgaaaataatccggtggagatacggccacagtcacagaagatgtggattgagttccagactccggaggggatccttgaaaataaaataaaaatcatt |
419595 |
T |
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| Q |
109 |
atgtacgtaccataaataatcatgcttatttatatatggttaaagataatagataactaaagacatatattttaataaagaaaattacttgtggcagaac |
208 |
Q |
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| T |
419596 |
atgtacgtaacataa----tcatgcttatttat----ggttaaagagaatagataactaaagacatatattttaataaagaaaattacttgtggcagaac |
419687 |
T |
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| Q |
209 |
tatccaaagtattgtgagatttgtgaatatcttgagtattagggtgctgagtttttctcctacgacgattatgatcagccaatctcttcctgcagctacg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419688 |
tatccaaagtattgtgagatttgtgaatatcttgagtattagggtgctgagtttttctcctacgacgattatgatcagccaatctcttcctgcagctacg |
419787 |
T |
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| Q |
309 |
ttttccattatcaaactcag |
328 |
Q |
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|||||||||||||||||||| |
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| T |
419788 |
ttttccattatcaaactcag |
419807 |
T |
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