View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20022_high_16 (Length: 344)

Name: NF20022_high_16
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20022_high_16
NF20022_high_16
[»] chr4 (1 HSPs)
chr4 (76-344)||(9453413-9453682)
[»] chr2 (2 HSPs)
chr2 (98-317)||(38944146-38944365)
chr2 (149-275)||(28127045-28127171)
[»] chr8 (1 HSPs)
chr8 (98-288)||(21545071-21545261)
[»] chr6 (1 HSPs)
chr6 (98-317)||(18328648-18328866)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 76 - 344
Target Start/End: Complemental strand, 9453682 - 9453413
Alignment:
Q  76 gattgaggtaatgaattactattttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggca 175  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9453682 gattgaggtaatgaattactattttaaaaatgattacataagcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacataaaaatggca 9453583  T
Q  176 ccaaaa-cttttgaacttggcatacaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataact 274  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9453582 ccaaaaacttttgaacttggtatacaacatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatctatggaataact 9453483  T
Q  275 atttactactccctatgatttactgcataacatgatcatgtgtnnnnnnntaatgtgccaaaaacaaagc 344  Q
    |||||||| |||||||||||||||||||||||||||| |||||       | ||||||||||||||||||    
T  9453482 atttactattccctatgatttactgcataacatgatcgtgtgtaaaaaaattatgtgccaaaaacaaagc 9453413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 38944146 - 38944365
Alignment:
Q  98 tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat 197  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  ||||| ||||    
T  38944146 tttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaaattttcaaacttagcat 38944245  T
Q  198 acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccctatgatttac 297  Q
    ||   |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||| |||||||| |||||||||||||||||||||    
T  38944246 actgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccctatgatttac 38944345  T
Q  298 tgcataacatgatcatgtgt 317  Q
    |||||| ||||||| |||||    
T  38944346 tgcatagcatgatcttgtgt 38944365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 28127171 - 28127045
Alignment:
Q  149 ttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcatacaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtg 248  Q
    |||||||||| || | ||||||| ||||| |||||||  ||||| ||| || | ||| ||| ||| ||  ||||||||||||| |||||||||||| |||    
T  28127171 ttttgaaaaatctgcctagaaattgcacctaaactttcaaacttagcacactacataaaaattgttttcacattttgataagcaaacaaatctatccgtg 28127072  T
Q  249 tagaaattcacatttatggaataacta 275  Q
    |||| | ||||||  ||||||||||||    
T  28127071 tagatactcacatccatggaataacta 28127045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 98 - 288
Target Start/End: Original strand, 21545071 - 21545261
Alignment:
Q  98 tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat 197  Q
    ||||||||  ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  21545071 tttaaaaacaattacataggctacgaaaaataaattatatatggtatcatgttttgaaaaacctacataaaaatgccaccaaaacttttgaacttggcat 21545170  T
Q  198 acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccct 288  Q
    || | |||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||    
T  21545171 actaaatataaaccgcgttcgcattttgataagcgaacaaatctatccgtgtagaaattcacatctattgaataactacttactactccct 21545261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 18328648 - 18328866
Alignment:
Q  98 tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat 197  Q
    ||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| |||  ||||| ||||    
T  18328648 tttaaaaatgattacataggtgagaaaaaataaatcatatatgatatcatgttttgaaaaacctacattgaaatgacaccaaaattttcaaacttagcat 18328747  T
Q  198 acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccctatgatttac 297  Q
    |||| || |||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||| |||||||| |||||||||||||||||||||    
T  18328748 acaacatttaaaatgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccctatgatttac 18328847  T
Q  298 tgcataacatgatcatgtgt 317  Q
     |||| |||||||| |||||    
T  18328848 agcat-acatgatcttgtgt 18328866  T

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