View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20022_high_18 (Length: 336)

Name: NF20022_high_18
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20022_high_18
NF20022_high_18
[»] chr7 (1 HSPs)
chr7 (9-301)||(48604344-48604636)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 48604344 - 48604636
Alignment:
Q  9 catcatcatataattttgttctaaactggaccacatcccactacttcatgcatagccctttattagatgaaaagaatcgaacgagaaagtaccggtagcg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48604344 catcatcatataattttgttctaaactggaccacatcccactacttcatgcatagccctttattagatgaaaagaatcgaacgagaaagtaccggtagcg 48604443  T
Q  109 ttggatgacatatattactatgaatctattatcagcaaagaaaacatgaatttatattggattggagtactggaagaagcactctcaaaatgtatcaagt 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48604444 ttggatgacatatattactatgaatctatgatcagcaaagaaaacatgaatttatattggattggagtactggaagaagcactctcaaaatgtatcatgt 48604543  T
Q  209 tggctatctttcaagattaacttataccatatggagaggacatacatacatgatacatctcctgcctcaacaactccaactatgacctgaaac 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48604544 tggctatctttcaagattaacttataccatatggagaggacatacatacatgatacatctcctgcctcaacaactccaactatgacctgaaac 48604636  T

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