View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_high_19 (Length: 328)
Name: NF20022_high_19
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 40021383 - 40021675
Alignment:
| Q |
18 |
tgaaatttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttacaaatatcttcaaagtcaatgtaaaagagcaactacag |
117 |
Q |
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| T |
40021383 |
tgaaatttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttacatatatcttcaaaaccaatgtaaaagagcaactacag |
40021482 |
T |
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| Q |
118 |
aagcatgcagagggattctaaagagtcgaaaccaaattatcatttcccgattggaggtcattacgtgccaagctttaaaatatgtgaaaaatgctctnnn |
217 |
Q |
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| T |
40021483 |
aagcatggagagggattccaaatagtcgaaaccaaattatcatttcccgattggaggtcattaggtgccaagctttaaaatctgtgaaaaatgctctaaa |
40021582 |
T |
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| Q |
218 |
nnnnttaattgcatcattaatcaccttcctcgccccattattaccatatgttgtaacaaaaaccatgactcctcccataggcaccacttgaat |
310 |
Q |
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| T |
40021583 |
aaaatcaattgcatcattaatcaccttcctccccccattattaccatatgttgtaacaaaaaccatgactccttccacatgcaccacttgaat |
40021675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27505092 - 27505050
Alignment:
| Q |
1 |
gttgaagagtaacatcttgaaatttcttattaattgttgaatta |
44 |
Q |
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| T |
27505092 |
gttgaagagtaacatcttgatatttctt-ttaattgttgaatta |
27505050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11262085 - 11262005
Alignment:
| Q |
1 |
gttgaagagtaacatcttgaaat-ttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttac |
80 |
Q |
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| T |
11262085 |
gttgaagagtaacaacctgaaatgttcttattaattgttgaattattatttaaaaatagtatgcagggtttagggtgttac |
11262005 |
T |
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