View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_high_30 (Length: 244)
Name: NF20022_high_30
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 9453430 - 9453215
Alignment:
| Q |
19 |
atgtgccaaaaacaaagcaacccagttgttagttccaaatatgatgtgaaaaattgttacaacccttgaaatttcaattggacttatagcatataaaaac |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9453430 |
atgtgccaaaaacaaagcaatccagttgttagttccaaatatgatgtgaaaaattgttacaacccttgaaatttcaattggacttatagcatatagaaac |
9453331 |
T |
|
| Q |
119 |
acatatgcacctagataattggataagaattctaatgcattcaaattttactactttctattgtaactgccttagttgcttatattccttgttgatgctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||||| ||||||||| |
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| T |
9453330 |
acatatgcacctagataattggataagaattctaatgcattcatgttttactactttatgttgtaactgccttagtgacttatattcctttttgatgctt |
9453231 |
T |
|
| Q |
219 |
tcatgaatatactgat |
234 |
Q |
| |
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|| |||||| |||||| |
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| T |
9453230 |
tcctgaataaactgat |
9453215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 234
Target Start/End: Original strand, 37684550 - 37684729
Alignment:
| Q |
55 |
aaatatgatgtgaaaaattgttacaacccttgaaatttcaattggacttatagcatataaaaacacatatgcacctagataattggataagaattctaat |
154 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37684550 |
aaatatgatatgaaaaattgttacaacccttgaaatttcaattggacttatagcatatagaaacacatatgcacctagataattggataagaattctaat |
37684649 |
T |
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| Q |
155 |
gcattcaaattttactactttctattgtaactgccttagttgcttatattccttgttgatgctttcatgaatatactgat |
234 |
Q |
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||||||| |||||||||||| | ||||||||||||||| ||||| ||||||| || |||||| ||||||| ||||||| |
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| T |
37684650 |
gcattcacgttttactactttatgctgtaactgccttagtggcttaaattccttttttatgcttacatgaatgtactgat |
37684729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 38944375 - 38944582
Alignment:
| Q |
19 |
atgtgccaaaaacaaagcaacccagttgttagttccaaatatgatgtgaaaaattgttacaacccttgaaatttcaattggacttatagcatataaaaac |
118 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| | |||| |
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| T |
38944375 |
atgtgccaaaaacaaaacaacccagctgttagttccaaatatgatgtgaaaaattgttacaaccctagaaattccaattggacttatagtataaagaaac |
38944474 |
T |
|
| Q |
119 |
acatatgcacctagataattggataagaattctaatgcattcaaattttactactttctattgtaactgccttagttgcttatattccttgttgatgctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||| ||||||| | ||||||| |
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| T |
38944475 |
acatatgcacctagataattggataagaattctaatgcattcacattttactgctttctgttgtaactgccttagtgacttagattccttttcgatgctt |
38944574 |
T |
|
| Q |
219 |
tcatgaat |
226 |
Q |
| |
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|||||||| |
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|
| T |
38944575 |
tcatgaat |
38944582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 18328876 - 18329075
Alignment:
| Q |
19 |
atgtgccaaaaacaaagcaacccagttgttagttccaaatatgatgtgaaaaattgttacaacccttgaaatttcaattggacttatagcatataaaaac |
118 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| || | |
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| T |
18328876 |
atgtgccaaaaaccaaacaacccatctgttagttccaaatatgatgtgaaaaattgttacaaccctagaaattctaattggacttataacatatagaagc |
18328975 |
T |
|
| Q |
119 |
acatatgcacctagataattggataagaattctaatgcattcaaattttactactttctattgtaactgccttagttgcttatattccttgttgatgctt |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||| |
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|
| T |
18328976 |
acatatgcacgtagataattggataagaattctaatgcattcacattttactactttctgttgtaactgccttagataattagattcctttttgatgctt |
18329075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 21545568 - 21545761
Alignment:
| Q |
19 |
atgtgccaaaaacaaagcaacccagttgttagttccaaatatgatgtgaaaaattgttacaacccttgaaatttcaattggacttatagcatataaaaac |
118 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |||| |
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| T |
21545568 |
atgtgccgaaaaccaagcaacccagctgttaattccgaatatgatgtgaaaaattgtttcaacccttgaaattccaataggacttatagcatatagaaac |
21545667 |
T |
|
| Q |
119 |
acatatgcacctagataattggataagaattctaatgcattcaaattttactactttctattgtaactgccttagttgcttatattccttgttgatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||| |||||| |
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|
| T |
21545668 |
acatatgcacctagataattggataagaattctaatgcattcacgttt---tactttctgttgtaactgccttagtggcttatattcctttttgatg |
21545761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 7499213 - 7499042
Alignment:
| Q |
55 |
aaatatgatgtgaaaaattgttacaacccttgaaatttcaattggacttatagcatataaaaacacatatgcacctagataattggataagaattctaat |
154 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7499213 |
aaatatgatatgaaaaattgttacaacccttgaaattccaattggacttatagcatatagaaacacatatgcacctagataattggataagaattctaat |
7499114 |
T |
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| Q |
155 |
gcattcaaattttactactttctattgtaactgccttagttgcttatattccttgttgatgctttcatgaat |
226 |
Q |
| |
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||||||| |||||||||||| | |||||||||||||||| ||||| ||||||| || |||||||| ||||| |
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| T |
7499113 |
gcattcatgttttactactttatgttgtaactgccttagtggcttaaattcctttttaatgctttcctgaat |
7499042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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