View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_high_31 (Length: 239)
Name: NF20022_high_31
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 33356748 - 33356535
Alignment:
| Q |
16 |
agattatccggcgggttgtcgcagtagaagcctttgtagttgcatatatttggaccaacccatgttaaggttattcctaatgggtcatatgttattgtgt |
115 |
Q |
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| T |
33356748 |
agattatccggcgggttgtcgcagtagaagcctttgtagttgcatatatttggaccaacccatgttaaggttattcctaatgggtcagatgttattgtgt |
33356649 |
T |
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| Q |
116 |
ttttgaaggcttgaatgattgggaaaactatagcaagtctttgatctaaaaaatttaagaggtcagggactaatggggataatattggagggagtattgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33356648 |
ttttgaaggcttgaatgattgggaaaactatagcaagtctttgatctaaaaaatttaagaggtcagggactaatggggataatattggagggagtattgg |
33356549 |
T |
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| Q |
216 |
ggatattcttggac |
229 |
Q |
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||||| | |||||| |
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| T |
33356548 |
ggataatattggac |
33356535 |
T |
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