View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20022_high_5 (Length: 503)

Name: NF20022_high_5
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20022_high_5
NF20022_high_5
[»] chr8 (5 HSPs)
chr8 (13-501)||(2652352-2652842)
chr8 (464-503)||(26915248-26915288)
chr8 (464-503)||(31119098-31119138)
chr8 (464-502)||(42874534-42874573)
chr8 (464-503)||(27733858-27733898)
[»] chr7 (3 HSPs)
chr7 (464-503)||(5937429-5937469)
chr7 (464-503)||(1885584-1885624)
chr7 (464-503)||(2144547-2144587)
[»] chr6 (3 HSPs)
chr6 (464-503)||(6751890-6751930)
chr6 (464-503)||(10031581-10031621)
chr6 (464-503)||(19369828-19369868)
[»] chr4 (3 HSPs)
chr4 (464-503)||(13307888-13307928)
chr4 (464-503)||(44362677-44362717)
chr4 (464-501)||(37496717-37496755)
[»] chr2 (4 HSPs)
chr2 (464-503)||(43586013-43586053)
chr2 (464-503)||(13501086-13501126)
chr2 (464-503)||(14450803-14450843)
chr2 (464-503)||(24067264-24067304)
[»] chr5 (1 HSPs)
chr5 (466-503)||(30080511-30080549)
[»] chr1 (1 HSPs)
chr1 (463-503)||(18946041-18946082)
[»] scaffold0314 (1 HSPs)
scaffold0314 (464-503)||(8959-8999)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 501
Target Start/End: Complemental strand, 2652842 - 2652352
Alignment:
Q  13 catcagacattgagacttttttatttaattgaaaaaattggtagcattttgacattttttatcttgg-atgcaatgtgtgttgtctaatggaaagcaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2652842 catcagacattgagacttttttatttaattgaaaaaattggtagcattttgacattttttatcttgggatgcaatgtgtgttgtctaatggaaagcaaat 2652743  T
Q  112 gatagccttttcatcggtgcttgaataagccaaacagtttttcatcatacatgagactgttttggtgttactattcagctaagctatggtaattgttaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2652742 gatagccttttcatcggtgcttgaataagccaaacagtttttcatcatacatgagactgttttggtgttactattcagctaagctatggtaattgttaac 2652643  T
Q  212 aaggacactttctcaagtacattgcttgggtggttggtgtgcttaagctattcttgagtttaagcccctttttctcaaacaattccttttcttcttagac 311  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2652642 aaggtcactttctcaagtacatcgcttgggtggttggtgtgcttaagctattcttgagtttaagcccctttttctcaaacaattccttttcttcttagac 2652543  T
Q  312 aagtttggagtgtagttagagaacaacaagcatacaaaatgtgtgaatatttcgtcagtctaatgaaatctcgatctcttttgacaaatacttctaattg 411  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||| |||||||||| |||| | ||||    
T  2652542 aagcttggagtgtagttagagaacaacaagcatacaaaatgtgtgaatatttcgtcagtctagtcaaattttgatcttttttgacaaacacttttgattg 2652443  T
Q  412 aaggcatgttgtggtatctgacacatgtcatgtcttacacagaca-cacatccacacttgtgattacattaattatgtcattttctcaaaa 501  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||    
T  2652442 aaggcatgttccggtatctaacacatgtcatgtcttacacagacaccacatcgacacttgtgattacattaattatgtcattttctaaaaa 2652352  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 26915248 - 26915288
Alignment:
Q  464 acacttgtgattacattaa-ttatgtcattttctcaaaatt 503  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  26915248 acacttgtgattacattaaattatgtcattttctcaaaatt 26915288  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 31119138 - 31119098
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  31119138 acacttgtgattacattgaattatgtcattttctcaaaatt 31119098  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 502
Target Start/End: Complemental strand, 42874573 - 42874534
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaat 502  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  42874573 acacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 27733898 - 27733858
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaatt 27733858  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 5937429 - 5937469
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  5937429 acacttgtgattacattgaattatgtcattttctcaaaatt 5937469  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 1885624 - 1885584
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  1885624 acacttgtgattacattgaattatgtcattttttcaaaatt 1885584  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 2144547 - 2144587
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  2144547 acacgtgtgattacattgaattatgtcattttctcaaaatt 2144587  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 6751890 - 6751930
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  6751890 acacttgtgattacattgaattatgtcattttctcaaaatt 6751930  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 10031621 - 10031581
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaatt 10031581  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 19369868 - 19369828
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  19369868 acacttgtgattacattgaattatgtcattttctcaaaatt 19369828  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 13307928 - 13307888
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  13307928 acacttgtgattacattgaattatgtcattttctcaaaatt 13307888  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 44362717 - 44362677
Alignment:
Q  464 acacttgtgattacattaa-ttatgtcattttctcaaaatt 503  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  44362717 acacttgtgattacattaaattatgtcattttctcaaaatt 44362677  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 464 - 501
Target Start/End: Complemental strand, 37496755 - 37496717
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaa 501  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  37496755 acacttgtgattacattgaattatgtcattttctcaaaa 37496717  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 43586013 - 43586053
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  43586013 acacttgtgattacattgaattatgtcattttctcaaaatt 43586053  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 13501086 - 13501126
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  13501086 acacttgtgattacattgaattatgtcattttcttaaaatt 13501126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 14450803 - 14450843
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  14450803 acacttgtgattacattgaattatgtgattttctcaaaatt 14450843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 24067304 - 24067264
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  24067304 acacttgtgattacattgaattatgtcattttcacaaaatt 24067264  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 30080511 - 30080549
Alignment:
Q  466 acttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaatt 30080549  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 503
Target Start/End: Original strand, 18946041 - 18946082
Alignment:
Q  463 cacacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  18946041 cacactcgtgattacattgaattatgtcattttctcaaaatt 18946082  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 8999 - 8959
Alignment:
Q  464 acacttgtgattacatt-aattatgtcattttctcaaaatt 503  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  8999 acacttgtgattacgttgaattatgtcattttctcaaaatt 8959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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