View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_high_7 (Length: 490)
Name: NF20022_high_7
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Original strand, 35723434 - 35723918
Alignment:
| Q |
7 |
gagtgagatgaagatatgaaatggagtgtgttgtgaaacgagggttcaaatcccgctctttattttttgttaattttaagtttgccaccgaaccggtggg |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35723434 |
gagtgaaatgaagatatgaaatggagtgtgttgtgaaacgagggttcaaatcccgctctttattttttgttaattttgagtttgccaccgaaccggtggg |
35723533 |
T |
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| Q |
107 |
ttgggtttagtggttaggatagtacttaaaccctaggttgcttttttgtgggagttagcttgctttttgcacccttattttttcttgtacacttcccttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35723534 |
ttgggtttagtggttaggatagtacttaaaccctaggttgcttttttgtgggagttggcttgctttttgcacccttattttttcttgtacacttcccttt |
35723633 |
T |
|
| Q |
207 |
aaacccgatttaatttcatgttnnnnnnntatttagatcttatgacattgaaatttgataatgtgacatgttgaccgagatgttttcatatttttcttat |
306 |
Q |
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|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
35723634 |
aaacccaatttaatttcatgttaaaaaaatgtttagatcttatgacattgaaatttgataatgtgacatgttgactgagatgttttcatatttttattat |
35723733 |
T |
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| Q |
307 |
gtaattgatttcaagtgatttttt-ctaatagggaaaaaggctaaatggtatgagaatgaggaaaggcagaaaacaacacaatataatttttaaacaata |
405 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |
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| T |
35723734 |
gtaactgatttcaagtgattttttcctaatagggaaaaaggctaaatggtatgagaatgaggaaaggcggaaaacaacacattgcaatttttaaacaata |
35723833 |
T |
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| Q |
406 |
attatcagtttgttctcatagacagctagttgtggtgccctttctttatgtatggcgaaccagttcaattgttcatctttcgttg |
490 |
Q |
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||||||||||||| ||| |||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35723834 |
attatcagtttgtcctcgtagatagctagttgcgatgccctttctttatgtatggtgaaccagttcaattgttcatctttcgttg |
35723918 |
T |
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