View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_high_9 (Length: 452)
Name: NF20022_high_9
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 445
Target Start/End: Complemental strand, 54424375 - 54423923
Alignment:
| Q |
3 |
gacacaaacagcaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcgtgacaattctggtaattgggttacatcac |
102 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54424375 |
gacacaaacaacaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcgtgacaattctggtaattgggttacatcac |
54424276 |
T |
|
| Q |
103 |
atgaagacctctgcactctcgttcataattacttcacctctctatttcgagcgcaacaaggtgattttcatcctattatatcttgtgttcagccaaggat |
202 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54424275 |
atgaagacttctgcactctcgttcataattacttcacctctctatttcgagcacaacaaggtgatcttcatcctattatatcttgtgttcagccaaggat |
54424176 |
T |
|
| Q |
203 |
atctgacgaagataattccatgctcactcaaccgttcactaagcagggattcaaggaagctatttttaacatgcatcccgataaatcacctgggccagac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
54424175 |
atctgacgaagataattccatgctcactcaaccgttcactaagcaggaattcaaggaagctatttttaacatgcattcggataaatcacctgggccagac |
54424076 |
T |
|
| Q |
303 |
agccttaacccggctttctacc-cagattttgggaagatatcggggatgaaatattctcttctgcctagtcttggttag--------cttcgagttatct |
393 |
Q |
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||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
54424075 |
ggccttaacccgattttctaccacagattttggaaagatatcggtgatgaaatattctcttctgcctcgtcttggttagctttgagacttcgagttatct |
54423976 |
T |
|
| Q |
394 |
a-ccccagatttaaatgctacaaacatagtgcttgcaccaaagggtgataatc |
445 |
Q |
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| T |
54423975 |
acccccagatttaaatgctacaaacatagtgcttgcaccaaagggtgataatc |
54423923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 3 - 447
Target Start/End: Original strand, 20120481 - 20120927
Alignment:
| Q |
3 |
gacacaaacagcaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcgtgacaattctggtaattgggttacatcac |
102 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | | |||||||| |||||||| |||||||||| ||||||| ||| | ||||||| |||| | | |
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| T |
20120481 |
gacacaaacagcagattttttcatgcttcagcatctgtcaggaaaaataaaaatacaataaagaagctacgtgacagttcagttaattggattacggcgc |
20120580 |
T |
|
| Q |
103 |
atgaagacctctgcactctcgttcataattacttcacctctctatttcgagcgcaacaaggtgattttcatcctattatatcttgtgttcagccaaggat |
202 |
Q |
| |
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|||||||||| || |||| |||||||| |||||||||||| |||| |||||||| |||||||| |||| |||||||| |||| ||||||| ||||||| |
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| T |
20120581 |
atgaagacctttgtgctcttgttcataactacttcacctctatattccgagcgcagcaaggtgaccttcaacctattatttcttttgttcagtcaaggat |
20120680 |
T |
|
| Q |
203 |
atctgacgaagataattccatgctcactcaaccgttcactaagcagggattcaaggaagctatttttaacatgcatcccgataaatcacctgggccagac |
302 |
Q |
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||| ||||||||||||||||| ||||| ||||| ||||||| || | |||||||||||| ||||| ||||||||||| |||||||| || || |||||| |
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| T |
20120681 |
atccgacgaagataattccattctcacacaacctttcactattcatgaattcaaggaagccattttcaacatgcatccggataaatccccgggcccagac |
20120780 |
T |
|
| Q |
303 |
agccttaacccggctttctacc-cagattttgggaagatatcggggatgaaatattctcttctgcctagtcttggttagcttcgagttatct-accccag |
400 |
Q |
| |
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||||||||||||||||||||| || |||||||| || || ||||| ||||| ||||||| ||||| ||||||||| ||||| | || ||| |||||| |
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| T |
20120781 |
ggccttaacccggctttctaccataggttttgggaggacattggggacgaaattttctcttttgccttgtcttggttggcttcaacttctctgcccccag |
20120880 |
T |
|
| Q |
401 |
atttaaatgctacaaacatagtgcttgcaccaaagggtgataatccg |
447 |
Q |
| |
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| ||||||| |||||||||||| || || |||||||| || |||||| |
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|
| T |
20120881 |
aattaaatgttacaaacatagttctcgctccaaagggagacaatccg |
20120927 |
T |
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