View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20022_low_1 (Length: 888)

Name: NF20022_low_1
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20022_low_1
NF20022_low_1
[»] chr7 (23 HSPs)
chr7 (474-686)||(48894015-48894227)
chr7 (109-310)||(48894388-48894593)
chr7 (13-106)||(48894933-48895026)
chr7 (699-811)||(37864204-37864317)
chr7 (699-809)||(4261243-4261353)
chr7 (699-809)||(38072191-38072301)
chr7 (699-809)||(7677710-7677819)
chr7 (474-572)||(47926898-47926996)
chr7 (699-811)||(38071936-38072049)
chr7 (703-811)||(669000-669109)
chr7 (702-811)||(32859274-32859382)
chr7 (699-811)||(17145660-17145774)
chr7 (699-811)||(668217-668330)
chr7 (699-811)||(4261493-4261606)
chr7 (699-774)||(38779498-38779573)
chr7 (371-462)||(48108016-48108107)
chr7 (110-225)||(48107749-48107864)
chr7 (231-317)||(48571508-48571594)
chr7 (383-416)||(47051810-47051843)
chr7 (699-735)||(38778892-38778928)
chr7 (113-153)||(48571372-48571412)
chr7 (705-811)||(7677461-7677568)
chr7 (700-789)||(17145791-17145881)
[»] chr1 (27 HSPs)
chr1 (700-811)||(47334238-47334349)
chr1 (703-805)||(47334803-47334906)
chr1 (473-588)||(50458657-50458772)
chr1 (705-811)||(12925917-12926022)
chr1 (699-811)||(31390724-31390833)
chr1 (700-811)||(23440656-23440767)
chr1 (700-811)||(51975124-51975236)
chr1 (699-811)||(9948033-9948146)
chr1 (699-811)||(16271045-16271158)
chr1 (699-811)||(43737767-43737880)
chr1 (699-807)||(48972346-48972455)
chr1 (699-811)||(17050491-17050602)
chr1 (699-809)||(38930350-38930461)
chr1 (699-807)||(50826992-50827101)
chr1 (699-811)||(51974475-51974588)
chr1 (699-811)||(193888-193999)
chr1 (703-811)||(20794331-20794438)
chr1 (699-809)||(6076012-6076119)
chr1 (699-811)||(16270245-16270359)
chr1 (699-789)||(23440784-23440875)
chr1 (704-809)||(48971748-48971854)
chr1 (700-811)||(6076765-6076876)
chr1 (699-789)||(9948807-9948897)
chr1 (699-789)||(43737897-43737988)
chr1 (699-811)||(38931143-38931257)
chr1 (390-440)||(50459100-50459150)
chr1 (699-740)||(27888709-27888750)
[»] chr4 (30 HSPs)
chr4 (699-811)||(36451325-36451437)
chr4 (699-811)||(25970144-25970252)
chr4 (704-811)||(17648042-17648149)
chr4 (699-803)||(36450766-36450871)
chr4 (699-805)||(25970706-25970813)
chr4 (699-809)||(39523172-39523281)
chr4 (700-807)||(9939161-9939269)
chr4 (699-811)||(21166272-21166385)
chr4 (699-811)||(29651229-29651342)
chr4 (699-811)||(36865614-36865727)
chr4 (699-811)||(45230403-45230516)
chr4 (687-774)||(11806117-11806204)
chr4 (699-811)||(10424956-10425069)
chr4 (699-811)||(11417725-11417838)
chr4 (699-811)||(26611180-26611293)
chr4 (699-811)||(38143634-38143747)
chr4 (699-811)||(39522413-39522526)
chr4 (701-811)||(29650455-29650566)
chr4 (703-811)||(10424165-10424274)
chr4 (703-811)||(31835190-31835299)
chr4 (699-789)||(36864855-36864946)
chr4 (699-811)||(26610383-26610497)
chr4 (705-773)||(53535835-53535903)
chr4 (699-779)||(11417866-11417947)
chr4 (699-811)||(21165485-21165598)
chr4 (697-789)||(38694738-38694831)
chr4 (699-811)||(23383348-23383459)
chr4 (703-789)||(38143530-38143617)
chr4 (719-797)||(5825392-5825466)
chr4 (699-740)||(31836429-31836470)
[»] chr3 (20 HSPs)
chr3 (700-811)||(45500512-45500622)
chr3 (699-811)||(38922781-38922894)
chr3 (699-811)||(44686292-44686405)
chr3 (699-811)||(45242104-45242217)
chr3 (700-811)||(3971799-3971911)
chr3 (700-811)||(3997967-3998079)
chr3 (699-809)||(36750083-36750193)
chr3 (699-809)||(52492179-52492289)
chr3 (699-811)||(19132709-19132822)
chr3 (699-811)||(45242884-45242997)
chr3 (699-811)||(3971030-3971143)
chr3 (699-811)||(32490092-32490205)
chr3 (699-811)||(41756329-41756442)
chr3 (699-811)||(3998738-3998851)
chr3 (699-811)||(36750335-36750447)
chr3 (699-811)||(38923562-38923675)
chr3 (699-811)||(44687060-44687173)
chr3 (705-811)||(52491930-52492037)
chr3 (700-789)||(19132602-19132692)
chr3 (699-811)||(41755537-41755650)
[»] scaffold0041 (2 HSPs)
scaffold0041 (699-809)||(27259-27368)
scaffold0041 (699-740)||(27544-27585)
[»] chr8 (8 HSPs)
chr8 (703-809)||(5035177-5035282)
chr8 (699-811)||(32536746-32536859)
chr8 (699-811)||(34992161-34992274)
chr8 (699-811)||(37639749-37639862)
chr8 (699-811)||(38023662-38023775)
chr8 (699-807)||(41859348-41859457)
chr8 (699-789)||(5034936-5035027)
chr8 (699-811)||(32537385-32537498)
[»] chr6 (14 HSPs)
chr6 (699-811)||(22579973-22580086)
chr6 (699-811)||(15082435-15082548)
chr6 (699-809)||(33480527-33480638)
chr6 (699-811)||(3542852-3542965)
chr6 (699-811)||(15083215-15083328)
chr6 (703-811)||(33018209-33018318)
chr6 (699-789)||(3542982-3543073)
chr6 (699-789)||(7193376-7193464)
chr6 (699-789)||(33018335-33018426)
chr6 (699-811)||(33479734-33479848)
chr6 (699-811)||(22587207-22587320)
chr6 (699-735)||(7193552-7193588)
chr6 (705-773)||(24991360-24991428)
chr6 (699-740)||(22582448-22582489)
[»] chr2 (7 HSPs)
chr2 (699-811)||(21471851-21471964)
chr2 (702-811)||(38834428-38834538)
chr2 (699-811)||(4479601-4479712)
chr2 (699-811)||(21471055-21471168)
chr2 (699-802)||(37548036-37548140)
chr2 (699-774)||(14573299-14573374)
chr2 (704-740)||(14573968-14574004)
[»] chr5 (10 HSPs)
chr5 (699-809)||(33001970-33002079)
chr5 (699-811)||(33002713-33002826)
chr5 (717-810)||(42518808-42518899)
chr5 (699-811)||(15183914-15184027)
chr5 (700-811)||(687245-687357)
chr5 (701-811)||(8040235-8040346)
chr5 (699-811)||(686454-686567)
chr5 (699-807)||(8204158-8204267)
chr5 (699-811)||(15183127-15183240)
chr5 (699-740)||(12190127-12190168)
[»] scaffold0311 (1 HSPs)
scaffold0311 (699-811)||(56-170)
[»] scaffold0700 (1 HSPs)
scaffold0700 (703-811)||(5361-5466)
[»] scaffold0332 (1 HSPs)
scaffold0332 (699-804)||(9162-9268)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 474 - 686
Target Start/End: Complemental strand, 48894227 - 48894015
Alignment:
Q  474 ctttgttcacagtctaaatagaagctcactatgaaataatcaatttttgtgccttgaaaattcttgacaaatggatctactcgttttacaaattcatccc 573  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48894227 ctttgttcacagtctaaatagaagctcactataaaagaatcaatttttgtgccttgaaaattcttgacaaatggatctactcgttttacaaattcatccc 48894128  T
Q  574 tactcatatccaaattgacgcgtttctccagatgatatagtagaagtattaaggacttcaatgagataccagatctagtggtgttgtgatttggttttag 673  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |    
T  48894127 tactcatatccaaattgacgcgtttctccaggtgatatagtagaagtattaaggacttcaatgagatgccagatctagtggtgtggtgatttggttttgg 48894028  T
Q  674 agacttgtgtttt 686  Q
    |||||||||||||    
T  48894027 agacttgtgtttt 48894015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 109 - 310
Target Start/End: Complemental strand, 48894593 - 48894388
Alignment:
Q  109 ctttataactaaccattgaaaatacggtcacatgcataatctcaagttcaggnnnnnnngttgcacaagtagcaacaagtgtattaagctcttgcttcaa 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  48894593 ctttataactaaccattgaaaatatggtcacatgcataatctcaagttcaggaaaaaaagttgcacaagtagcaacaagtgtattaagctcttgcttcaa 48894494  T
Q  209 tgaaatagagaattcaacaatcgggtattgaagttcaaagtatccaaaacgtcctccaaatgagt----gagttcaaggcaacctagcttcaatgaagta 304  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||    
T  48894493 tgaaatagagaattcaacaatcgggtattaaagttcaaagtatccaaagcgtcctccaaatgagtgagtgagttcaaggcaacctagcttcaatgaagta 48894394  T
Q  305 agttta 310  Q
    ||||||    
T  48894393 agttta 48894388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 48895026 - 48894933
Alignment:
Q  13 aatattgacggaagttgtaacctgaataaaatagtaagattcaaaatacaatcaaaagactgagaaatataatatatatagatcactctttcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48895026 aatattgacggaagttgtaacctgaataaaatagtaagattcaaaatacaatcaaaagactgagaaatataatatatatagatcactttttcaa 48894933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 37864317 - 37864204
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || ||||||||||||||||||||||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  37864317 catgggaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 37864218  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  37864217 tctctttcatgtcc 37864204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 699 - 809
Target Start/End: Original strand, 4261243 - 4261353
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| || | || ||| || |||||||| || |||||||||||| ||||||||||||||||| | ||    
T  4261243 catgggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaacctc 4261341  T
Q  798 tctctttcatgt 809  Q
    ||||||||||||    
T  4261342 tctctttcatgt 4261353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 699 - 809
Target Start/End: Complemental strand, 38072301 - 38072191
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||  || | || ||| || |||||||| ||| ||||||||||| ||||||||||||||||||| ||    
T  38072301 catgggaaagttgatcatgtccattagattaaatgatgaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctc 38072203  T
Q  798 tctctttcatgt 809  Q
    ||||||||||||    
T  38072202 tctctttcatgt 38072191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 699 - 809
Target Start/End: Complemental strand, 7677819 - 7677710
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    ||||||||||||||| || | |||||||||||||||| |||| || ||| || || ||||| ||||||| |||||| ||||||| ||||||||||| |||    
T  7677819 catgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaacactaaattatt-ttttacaatatcttccaccctct 7677721  T
Q  799 ctctttcatgt 809  Q
    |||||||||||    
T  7677720 ctctttcatgt 7677710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 47926996 - 47926898
Alignment:
Q  474 ctttgttcacagtctaaatagaagctcactatgaaataatcaatttttgtgccttgaaaattcttgacaaatggatctactcgttttacaaattcatcc 572  Q
    ||||||||||| | ||||||||||||||||| |||| |||  ||   ||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  47926996 ctttgttcacaatttaaatagaagctcactaggaaagaattgatcactgtgccaggaaaattcttgacaaattgatctactcgttttacaaattcatcc 47926898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 38071936 - 38072049
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  38071936 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 38072035  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  38072036 tctctttcatgtcc 38072049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 703 - 811
Target Start/End: Complemental strand, 669109 - 669000
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatctctc 801  Q
    ||||||||||| ||||||||||||| ||||||| |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||||||    
T  669109 ggaaagttgatcatatccattagatcaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctc 669010  T
Q  802 tttcatgtcc 811  Q
    ||||||||||    
T  669009 tttcatgtcc 669000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 702 - 811
Target Start/End: Original strand, 32859274 - 32859382
Alignment:
Q  702 gggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctctc 801  Q
    ||||||||||||  ||| |||||||||||||| | |||| || ||| | ||||||||| |||| || |||||| ||||||||||||||||||| |||| |    
T  32859274 gggaaagttgatagtatgcattagattaaatgtggaacacattcttatactactctctcaacattaaattatt-ttttacactatcttccaccctctcac 32859372  T
Q  802 tttcatgtcc 811  Q
    ||||||||||    
T  32859373 tttcatgtcc 32859382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 17145660 - 17145774
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagatta-ttgttttacactatcttccaccat 796  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||| || ||||| |||||||| |||  |    
T  17145660 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacact 17145759  T
Q  797 ctctctttcatgtcc 811  Q
    |||||||||||||||    
T  17145760 ctctctttcatgtcc 17145774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 668217 - 668330
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||  |||| || | | || |||||||| || ||| |||||||| ||||| |||||||| |||  ||    
T  668217 catgggaaagttgatcatgtccattagattaaatgaagaacatattcctatcatactctctcaaccaccagattatttttttatactatctttcacactc 668316  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  668317 tctctttcatgtcc 668330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 4261606 - 4261493
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| ||   | || |||||||| || || ||||||||| ||||| |||||||| |||  ||    
T  4261606 catgggaaagttgatcatctccattagattaaatgaggaacatatttctatcatactctctcaaccattagattatttttttatactatctttcacactc 4261507  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  4261506 tctctttcatgtcc 4261493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 774
Target Start/End: Complemental strand, 38779573 - 38779498
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattatt 774  Q
    ||||||||||||||| || |||||||||||||||||| || | || ||| |  |||||||| ||||||||||||||    
T  38779573 catgggaaagttgatcatgtccattagattaaatgaggaatatattcttataatactctctcaacactagattatt 38779498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 371 - 462
Target Start/End: Original strand, 48108016 - 48108107
Alignment:
Q  371 atagcaccctataaccttgagatgacataaggatgaacttactatctttggaaatgatgatttgaactcatagaaaattaaacaaagttctt 462  Q
    ||||||||||||| |||||||||||||||  |||||||||||||||| ||| | | ||||||| || ||| | |||| ||| ||||| ||||    
T  48108016 atagcaccctatagccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaagtaagcaaagctctt 48108107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 48107749 - 48107864
Alignment:
Q  110 tttataactaaccattgaaaatacggtcacatgcataatctcaagttcaggnnnnnnngttgcacaagtagcaacaagtgtattaagctcttgcttcaat 209  Q
    ||||| |||||||||||| |||  | |||  ||||||||||||||||||||       ||||||||   |||||||  ||||||||||||||| ||||||    
T  48107749 tttatgactaaccattgataatgtgctcaactgcataatctcaagttcaggaaaaaaagttgcacataaagcaacatatgtattaagctcttgtttcaat 48107848  T
Q  210 gaaatagagaattcaa 225  Q
    |||||  |||||||||    
T  48107849 gaaatgaagaattcaa 48107864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 48571508 - 48571594
Alignment:
Q  231 gggtattgaagttcaaagtatccaaaacgtcctccaaatgagtgagttcaaggcaacctagcttcaatgaagtaagtttaaggcaat 317  Q
    ||||||| |||||||||||||||||| ||| ||   |   ||||||||||||  || |||||| |||||||||||||||||||||||    
T  48571508 gggtattaaagttcaaagtatccaaaccgttcttggatgaagtgagttcaagagaatctagctccaatgaagtaagtttaaggcaat 48571594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 47051810 - 47051843
Alignment:
Q  383 aaccttgagatgacataaggatgaacttactatc 416  Q
    ||||||||||||||||||||||||||||||||||    
T  47051810 aaccttgagatgacataaggatgaacttactatc 47051843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 735
Target Start/End: Original strand, 38778892 - 38778928
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgag 735  Q
    ||||||||||||||| |||||||||||||||||||||    
T  38778892 catgggaaagttgatcatatccattagattaaatgag 38778928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 48571372 - 48571412
Alignment:
Q  113 ataactaaccattgaaaatacggtcacatgcataatctcaa 153  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  48571372 ataactaaccattgaaaatatggtcacatgtataatctcaa 48571412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 811
Target Start/End: Original strand, 7677461 - 7677568
Alignment:
Q  705 aaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatctctctt 803  Q
    ||||||||| || |||||||||||||||||| |||| ||   | || |||||||| || ||||| |||||| ||||| ||||||||  ||  ||||||||    
T  7677461 aaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactaaattatttttttatactatcttttacactctctctt 7677560  T
Q  804 tcatgtcc 811  Q
    ||||||||    
T  7677561 tcatgtcc 7677568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 789
Target Start/End: Complemental strand, 17145881 - 17145791
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    |||||||||||||| || |||||||||||||||||  |||| || | | || |||||||| || |||||||||||| ||||| | ||||||    
T  17145881 atgggaaagttgatcatgtccattagattaaatgaataacatattcctatcatactctctcaaccactagattatttttttatattatctt 17145791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 5e-49; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 700 - 811
Target Start/End: Original strand, 47334238 - 47334349
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctc 799  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47334238 atgggaaagttgattatgtccattagattaaatgagaaacaaatccttatcctactctctcaacactagattattgttttacactatcttccaccatctc 47334337  T
Q  800 tctttcatgtcc 811  Q
    ||||||||||||    
T  47334338 tctttcatgtcc 47334349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 703 - 805
Target Start/End: Complemental strand, 47334906 - 47334803
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctctta-acactagattattgttttacactatcttccaccatctctc 801  Q
    |||||||||||||| |||||| ||||||||||| |||||||| || ||||||||||| | |||||| ||  |||||||||||||||||||||||||||||    
T  47334906 ggaaagttgattatgtccattggattaaatgagtaacaaatctttatcctactctctcatacactatatcgttgttttacactatcttccaccatctctc 47334807  T
Q  802 tttc 805  Q
    ||||    
T  47334806 tttc 47334803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 473 - 588
Target Start/End: Complemental strand, 50458772 - 50458657
Alignment:
Q  473 actttgttcacagtctaaatagaagctcactatgaaataatcaatttttgtgccttgaaaattcttgacaaatggatctactcgttttacaaattcatcc 572  Q
    |||||||||||| |||||||| ||  |||||| |||| ||||||| |||||||||| |||||||||||||||  | |||||||| |||||||||||||||    
T  50458772 actttgttcacaatctaaataaaaattcactacgaaagaatcaatatttgtgccttcaaaattcttgacaaaccggtctactcgatttacaaattcatcc 50458673  T
Q  573 ctactcatatccaaat 588  Q
    ||||||| ||| ||||    
T  50458672 ctactcaaatcaaaat 50458657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 705 - 811
Target Start/End: Original strand, 12925917 - 12926022
Alignment:
Q  705 aaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctctcttt 804  Q
    ||||||||| || |||||||||||||||| | || | || ||| | ||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||    
T  12925917 aaagttgataatgtccattagattaaatgtggaatacattcttatactactctctcaacattagattatt-ttttacactatcttccaccctctctcttt 12926015  T
Q  805 catgtcc 811  Q
    |||||||    
T  12926016 catgtcc 12926022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 31390833 - 31390724
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    |||||||||||||||||| |||||| || |||||||| |||| ||  || ||||||||||| |||| ||||||||| |||||||||||||| |||  |||    
T  31390833 catgggaaagttgattatgtccattggaataaatgaggaacacatttttatcctactctctcaacattagattatt-ttttacactatctttcac--tct 31390737  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  31390736 ctctttcatgtcc 31390724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 700 - 811
Target Start/End: Original strand, 23440656 - 23440767
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatct 798  Q
    |||| |||||||||||| ||||||||||||||||||||||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  |||    
T  23440656 atggaaaagttgattatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatt-ttttatactatctttcacactct 23440754  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  23440755 ctctttcatgtcc 23440767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 700 - 811
Target Start/End: Complemental strand, 51975236 - 51975124
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatct 798  Q
    |||||||||||||| || || ||||||||||||||| |||| || | | || |||||||||||| ||||||||||| ||||| |||||||| |||  |||    
T  51975236 atgggaaagttgatcatgtcaattagattaaatgaggaacatattcctatcatactctcttaaccactagattatttttttatactatctttcacactct 51975137  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  51975136 ctctttcatgtcc 51975124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 9948033 - 9948146
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| |||| |||||||||||||||| |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  9948033 catggaaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 9948132  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  9948133 tctctttcatgtcc 9948146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 16271158 - 16271045
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| ||||| || |||  ||    
T  16271158 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatatttcacactc 16271059  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  16271058 tctctttcatgtcc 16271045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 43737767 - 43737880
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| || | ||  || || |||||||| || |||||||||||| |||||||||||||| |||  ||    
T  43737767 catgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatactctctcaaccactagattatttttttacactatctttcacattc 43737866  T
Q  798 tctctttcatgtcc 811  Q
    ||||||| ||||||    
T  43737867 tctctttgatgtcc 43737880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 807
Target Start/End: Complemental strand, 48972455 - 48972346
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| || ||||||||||||||||||||||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  48972455 catggaaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 48972356  T
Q  798 tctctttcat 807  Q
    ||||||||||    
T  48972355 tctctttcat 48972346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 17050491 - 17050602
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    ||||||||||||||| || | |||||||||||||  |  ||| || ||| | ||||||||| || | ||||||||| ||||||||||||||||||| |||    
T  17050491 catgggaaagttgataatgttcattagattaaatatggtacacattcttatactactctctcaatattagattatt-ttttacactatcttccaccctct 17050589  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  17050590 ctctttcatgtcc 17050602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 809
Target Start/End: Original strand, 38930350 - 38930461
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| |||||||||| ||||||| || |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  38930350 catgggaaagttgatcatatccattaaattaaataaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 38930449  T
Q  798 tctctttcatgt 809  Q
    ||||||||||||    
T  38930450 tctctttcatgt 38930461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 807
Target Start/End: Complemental strand, 50827101 - 50826992
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||  || || |||||||| || ||||| |||||| ||||| | |||||| |||  ||    
T  50827101 catgggaaagttgatcatgtccattagattaaatgagaaacatatttttatcatactctctcaaccactaaattatttttttatagtatctttcacactc 50827002  T
Q  798 tctctttcat 807  Q
    ||||||||||    
T  50827001 tctctttcat 50826992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 51974475 - 51974588
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || || ||||||||||||||  |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  51974475 catgggaaagttgatcatgtctattagattaaatgaagaacatattcctatcatactctctcaactactagattatttttttatactatctttcacattc 51974574  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  51974575 tctctttcatgtcc 51974588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 193888 - 193999
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    |||| ||||||| || || ||||||| |||||||||| |||| || ||| || ||||||||  ||||||||||||| ||||| | |||||| || |||||    
T  193888 catgagaaagttaatcatgtccattaaattaaatgaggaacatattcttatcatactctctccacactagattatt-ttttatattatctttcatcatct 193986  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  193987 ctctttcatgtcc 193999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 703 - 811
Target Start/End: Original strand, 20794331 - 20794438
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctctct 802  Q
    ||||||||||| || | |||||||||||||| | |||| || ||| |   ||||||| |||| ||||||||| ||||||||||| ||||||| |||||||    
T  20794331 ggaaagttgataatgtgcattagattaaatgtggaacacattcttatatcactctctcaacattagattatt-ttttacactattttccaccctctctct 20794429  T
Q  803 ttcatgtcc 811  Q
    |||||||||    
T  20794430 ttcatgtcc 20794438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 699 - 809
Target Start/End: Original strand, 6076012 - 6076119
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    |||| |||||||||| || |||||||||||||||||| || | ||  || || || ||||| ||||||| |||||| ||||||||||||||||||  |||    
T  6076012 catgagaaagttgatcatgtccattagattaaatgaggaatacatttttatcatagtctctcaacactaaattatt-ttttacactatcttccac--tct 6076108  T
Q  799 ctctttcatgt 809  Q
    |||||||||||    
T  6076109 ctctttcatgt 6076119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 16270245 - 16270359
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagatta-ttgttttacactatcttccaccat 796  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||| || ||||| |||||||| |||  |    
T  16270245 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacact 16270344  T
Q  797 ctctctttcatgtcc 811  Q
    | |||||||||||||    
T  16270345 ccctctttcatgtcc 16270359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 789
Target Start/End: Complemental strand, 23440875 - 23440784
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||||||||||| || |||||||||||||||||| || | || | | || |||||||| || |||||||||||| ||||| ||||||||    
T  23440875 catgggaaagttgatcatgtccattagattaaatgaggaatatattcctatcatactctctcaaccactagattatttttttatactatctt 23440784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 704 - 809
Target Start/End: Original strand, 48971748 - 48971854
Alignment:
Q  704 gaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatctctct 802  Q
    |||||||||| ||||  ||||||||||||||| |||| || | | || |||||||| ||| |||| |||||| ||||| |||||||| |||  |||||||    
T  48971748 gaaagttgatcatataaattagattaaatgaggaacatattcctatcatactctctcaaccactatattatttttttatactatctttcacactctctct 48971847  T
Q  803 ttcatgt 809  Q
    |||||||    
T  48971848 ttcatgt 48971854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 811
Target Start/End: Complemental strand, 6076876 - 6076765
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatct 798  Q
    |||| ||||||||| || ||||||| |||||||||| |||| || | | || |||||||| ||| | ||||||||| ||||| |||||||| |||  |||    
T  6076876 atggaaaagttgatcatgtccattatattaaatgagtaacatattcctatcatactctctcaaccaatagattatt-ttttatactatctttcacactct 6076778  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  6076777 ctctttcatgtcc 6076765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 789
Target Start/End: Complemental strand, 9948897 - 9948807
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||| | || |||||||||||| ||||| ||||||||    
T  9948897 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctatcaaccactagattatt-ttttatactatctt 9948807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 789
Target Start/End: Complemental strand, 43737988 - 43737897
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || || ||||| || |||||||||||| ||||| | ||||||    
T  43737988 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatattctctcaaccactagattatttttttatattatctt 43737897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 38931257 - 38931143
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagatta-ttgttttacactatcttccaccat 796  Q
    ||||||||||||||| |||||||||| ||||||| ||||||| ||   | || |||||||| || ||||| |||| || ||||| | |||||| |||  |    
T  38931257 catgggaaagttgatcatatccattaaattaaataagaaacatatttctatcatactctctcaaccactatattattttttttatattatctttcacact 38931158  T
Q  797 ctctctttcatgtcc 811  Q
    |||||||||||||||    
T  38931157 ctctctttcatgtcc 38931143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 50459150 - 50459100
Alignment:
Q  390 agatgacataaggatgaacttactatctttggaaatgatgatttgaactca 440  Q
    |||| ||| ||||||||||| ||||||||||| | ||||||||||||||||    
T  50459150 agataacacaaggatgaactcactatctttggcattgatgatttgaactca 50459100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 740
Target Start/End: Original strand, 27888709 - 27888750
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaaca 740  Q
    ||||||||||||||| || |||||||||||||||||| ||||    
T  27888709 catgggaaagttgatcatgtccattagattaaatgaggaaca 27888750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 8e-45; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 36451437 - 36451325
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36451437 catggaaaagttgattatgtccattagattaaatgaaaaacaaatccttatcctactctctcaacactagattattgttttacactatcttccaccatct 36451338  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  36451337 ctctttcatgtcc 36451325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 25970144 - 25970252
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| || || ||||||||   ||||||||||||||||||||||||||||||||||||    
T  25970144 catgggaaagttgat-atgtccattagattaaatgagaaacaaatctttatcatactctct---cactagattattgttttacactatcttccaccatct 25970239  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  25970240 ctctttcatgtcc 25970252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 704 - 811
Target Start/End: Complemental strand, 17648149 - 17648042
Alignment:
Q  704 gaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctctctt 803  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||| || |||||||| ||||||| |||||||||||||||||||||||| | ||||||||    
T  17648149 gaaagttgattatatccattagattaaataagaaataaattcttatcttactctctcaacactatattattgttttacactatcttccatcctctctctt 17648050  T
Q  804 tcatgtcc 811  Q
    ||||||||    
T  17648049 tcatgtcc 17648042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 699 - 803
Target Start/End: Original strand, 36450766 - 36450871
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctctta-acactagattattgttttacactatcttccaccatc 797  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||| || ||||||||||| | |||||||||| |||||||||||||||||||||||||    
T  36450766 catgggaaagttgattatgtccattggattaaatgagtaacaaatctttatcctactctctcatacactagattgttgttttacactatcttccaccatc 36450865  T
Q  798 tctctt 803  Q
    ||||||    
T  36450866 tctctt 36450871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 699 - 805
Target Start/End: Complemental strand, 25970813 - 25970706
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctctta-acactagattattgttttacactatcttccaccatc 797  Q
    |||| ||||||||||||| ||||||  |||||||||| |||||||| || ||||||||||| | |||||||||| |||||||||||||||||||||||||    
T  25970813 catgagaaagttgattatgtccattgaattaaatgagtaacaaatctttatcctactctctcatacactagattgttgttttacactatcttccaccatc 25970714  T
Q  798 tctctttc 805  Q
    ||||||||    
T  25970713 tctctttc 25970706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 699 - 809
Target Start/End: Complemental strand, 39523281 - 39523172
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    ||||||||||||||| || |||||||||||||||||| || | ||| ||  | |||||||| ||||||| |||||| ||||||||||||||||||| |||    
T  39523281 catgggaaagttgatcatgtccattagattaaatgaggaatacatctttaccatactctctcaacactaaattatt-ttttacactatcttccaccctct 39523183  T
Q  799 ctctttcatgt 809  Q
    |||||||||||    
T  39523182 ctctttcatgt 39523172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 700 - 807
Target Start/End: Original strand, 9939161 - 9939269
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatct 798  Q
    |||||||||||||| || ||||||||||||||||||||||| || ||| || |||||||| || |||||||||||| ||||| |||||||| |||  |||    
T  9939161 atgggaaagttgatcatgtccattagattaaatgagaaacatattcttatcatactctctcaaccactagattatttttttatactatctttcacattct 9939260  T
Q  799 ctctttcat 807  Q
    |||||||||    
T  9939261 ctctttcat 9939269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 21166385 - 21166272
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  21166385 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 21166286  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  21166285 tctctttcatgtcc 21166272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 29651342 - 29651229
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| ||||| ||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  29651342 catgggaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 29651243  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  29651242 tctctttcatgtcc 29651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 36865727 - 36865614
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| ||||||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| ||||||||  ||  ||    
T  36865727 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatcttttacactc 36865628  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  36865627 tctctttcatgtcc 36865614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 45230403 - 45230516
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| |||| |||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  45230403 catgggaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 45230502  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  45230503 tctctttcatgtcc 45230516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 687 - 774
Target Start/End: Original strand, 11806117 - 11806204
Alignment:
Q  687 ggtggggtttagcatgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattatt 774  Q
    |||||||||||||||||||||||| || || |||||||||||||||||| |||| ||  || ||||||||||| |||||||| |||||    
T  11806117 ggtggggtttagcatgggaaagttaatcatgtccattagattaaatgaggaacacatttttatcctactctctcaacactagtttatt 11806204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 10425069 - 10424956
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| ||||||||||||||||||||| || | || | | || |||||||| || |||||||||||| ||||| | |||||| |||  ||    
T  10425069 catgggaaagttgatcatatccattagattaaatgaggaatatattcctatcatactctctcaaccactagattatttttttatattatctttcacactc 10424970  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  10424969 tctctttcatgtcc 10424956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 11417725 - 11417838
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||  ||||| |||||||| |||  ||    
T  11417725 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatatttttatactatctttcacactc 11417824  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  11417825 tctctttcatgtcc 11417838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 26611293 - 26611180
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| ||||||||  ||  ||    
T  26611293 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatcttttacactc 26611194  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  26611193 tctctttcatgtcc 26611180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 38143747 - 38143634
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||| | || |||||||||||||||||| |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  38143747 catgggaaagttggtcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 38143648  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  38143647 tctctttcatgtcc 38143634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 39522413 - 39522526
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| ||||||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| | |  ||    
T  39522413 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcgcactc 39522512  T
Q  798 tctctttcatgtcc 811  Q
     |||||||||||||    
T  39522513 cctctttcatgtcc 39522526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 701 - 811
Target Start/End: Original strand, 29650455 - 29650566
Alignment:
Q  701 tgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatctc 799  Q
    ||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||||    
T  29650455 tgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctc 29650554  T
Q  800 tctttcatgtcc 811  Q
    | ||||||||||    
T  29650555 tttttcatgtcc 29650566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 703 - 811
Target Start/End: Original strand, 10424165 - 10424274
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatctctc 801  Q
    ||||||||||| || |||||||||||||||||| |||| ||   | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||||||    
T  10424165 ggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctc 10424264  T
Q  802 tttcatgtcc 811  Q
    ||||||||||    
T  10424265 tttcatgtcc 10424274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 703 - 811
Target Start/End: Original strand, 31835190 - 31835299
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatctctc 801  Q
    |||||||||||||| |||||||||||||| ||| |||| || | | || |||||||| || |||||||||||  ||||| |||||||| |||  ||||||    
T  31835190 ggaaagttgattatgtccattagattaaacgaggaacatattcctatcatactctctcaaccactagattatctttttatactatctttcacactctctc 31835289  T
Q  802 tttcatgtcc 811  Q
    ||||||||||    
T  31835290 tttcatgtcc 31835299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 699 - 789
Target Start/End: Original strand, 36864855 - 36864946
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    |||| |||||||||| || ||||||||||||||||||||||| || | | || |||||||| || |||||||||||| ||||| ||||||||    
T  36864855 catgagaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctt 36864946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 26610383 - 26610497
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagatta-ttgttttacactatcttccaccat 796  Q
    ||||||||| ||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||| || ||||| |||||||| |||  |    
T  26610383 catgggaaaattgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacact 26610482  T
Q  797 ctctctttcatgtcc 811  Q
    |||||||||||||||    
T  26610483 ctctctttcatgtcc 26610497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 705 - 773
Target Start/End: Complemental strand, 53535903 - 53535835
Alignment:
Q  705 aaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattat 773  Q
    |||||||||||||||||||||||||||||| ||| | ||  || || ||||| ||||||||||||||||    
T  53535903 aaagttgattatatccattagattaaatgaaaaatatattgttatcttactcacttaacactagattat 53535835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 779
Target Start/End: Complemental strand, 11417947 - 11417866
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgtttt 779  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||    
T  11417947 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttt 11417866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 21165485 - 21165598
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    |||| |||||||||| || |||||| ||||||||||| |||| ||   | || |||||||| ||| ||||||||| | ||||| |||||||| |||  ||    
T  21165485 catgagaaagttgatcatgtccatttgattaaatgaggaacatatttctatcatactctctcaaccactagattaattttttatactatctttcacagtc 21165584  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  21165585 tctctttcatgtcc 21165598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 789
Target Start/End: Original strand, 38694738 - 38694831
Alignment:
Q  697 agcatgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||| ||||||||| |||| |||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| | ||||||    
T  38694738 agcatggaaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatattatctt 38694831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 23383348 - 23383459
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    |||||||||||| ||| |||||||| ||| ||||||  |||| |  ||| || |||||  | || ||||||||| | ||||||||||||||||||| |||    
T  23383348 catgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcatactccatcaatactagattaat-ttttacactatcttccaccctct 23383446  T
Q  799 ctctttcatgtcc 811  Q
    ||||| |||||||    
T  23383447 ctcttccatgtcc 23383459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 789
Target Start/End: Original strand, 38143530 - 38143617
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| | ||||||    
T  38143530 ggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatattatctt 38143617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 797
Target Start/End: Original strand, 5825392 - 5825466
Alignment:
Q  719 ccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatc 797  Q
    ||||||||| ||||||| |||| ||  || ||||||||||| |||||||||||    ||||||||||||||| ||||||    
T  5825392 ccattagatcaaatgaggaacacattattatcctactctctcaacactagatt----ttttacactatcttctaccatc 5825466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 740
Target Start/End: Complemental strand, 31836470 - 31836429
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaaca 740  Q
    ||||||||||||||| || |||||||||||||||||| ||||    
T  31836470 catgggaaagttgatcatgtccattagattaaatgaggaaca 31836429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 700 - 811
Target Start/End: Original strand, 45500512 - 45500622
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctc 799  Q
    ||||||||||||||||| |||||||||||||||||| |||| || ||| | ||||||||| ||||||||||||||||||||  |||||||||||| ||||    
T  45500512 atgggaaagttgattatgtccattagattaaatgaggaacacattcttattctactctctcaacactagattattgtttta-tctatcttccaccctctc 45500610  T
Q  800 tctttcatgtcc 811  Q
    ||||||||||||    
T  45500611 tctttcatgtcc 45500622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 38922781 - 38922894
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| |||||||||||||||||||||||||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  38922781 catgggaaagttgatcatatccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 38922880  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  38922881 tctctttcatgtcc 38922894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 44686292 - 44686405
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    |||| |||||||||| || ||||||||||||||||||||||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  44686292 catgagaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 44686391  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  44686392 tctctttcatgtcc 44686405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 45242104 - 45242217
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  45242104 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 45242203  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  45242204 tctctttcatgtcc 45242217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 700 - 811
Target Start/End: Complemental strand, 3971911 - 3971799
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatct 798  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||   | || |||||||| || |||||||||||| ||||| |||||||| |||  |||    
T  3971911 atgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactct 3971812  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  3971811 ctctttcatgtcc 3971799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 700 - 811
Target Start/End: Original strand, 3997967 - 3998079
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatct 798  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||   | || |||||||| || |||||||||||| ||||| |||||||| |||  |||    
T  3997967 atgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactct 3998066  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  3998067 ctctttcatgtcc 3998079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 699 - 809
Target Start/End: Original strand, 36750083 - 36750193
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| || | |||||||||||||||| || | || ||| || |||||||| ||| ||||||||||| ||||||||||||||||||| ||    
T  36750083 catggaaaagttgatcatgttcattagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctc 36750181  T
Q  798 tctctttcatgt 809  Q
    ||||||||||||    
T  36750182 tctctttcatgt 36750193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 699 - 809
Target Start/End: Complemental strand, 52492289 - 52492179
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||| | || |||||||||||||||||| || | || ||| || |||||||| ||| ||||||||||| ||||||||||||||||||| ||    
T  52492289 catggaaaagttgttcatgtccattagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctc 52492191  T
Q  798 tctctttcatgt 809  Q
    ||||||||||||    
T  52492190 tctctttcatgt 52492179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 19132822 - 19132709
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || ||| || |||||||| || |||| ||||||| ||||| | |||||| |||  ||    
T  19132822 catgggaaagttgatcatgtccattagattaaatgaggaacatattcttatcatactctctcaaccactggattatttttttatattatctttcacattc 19132723  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  19132722 tctctttcatgtcc 19132709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 45242997 - 45242884
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| ||||| ||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| | |||||| |||  ||    
T  45242997 catgggaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatattatctttcacactc 45242898  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  45242897 tctctttcatgtcc 45242884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 3971030 - 3971143
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||| ||||||| ||||| |||||||| |||  ||    
T  3971030 catggaaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccacttgattatttttttatactatctttcacactc 3971129  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  3971130 tctctttcatgtcc 3971143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 32490205 - 32490092
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  32490205 catggaaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 32490106  T
Q  798 tctctttcatgtcc 811  Q
     |||||||||||||    
T  32490105 cctctttcatgtcc 32490092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 41756442 - 41756329
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || | |||||||||||||||| |||| || | | || |||||||| ||| | ||||||||| ||||| |||||||| |||  ||    
T  41756442 catgggaaagttgatcatgttcattagattaaatgaggaacatattcctatcatactctctcaaccattagattatttttttatactatctttcacactc 41756343  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  41756342 tctctttcatgtcc 41756329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 3998851 - 3998738
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||| ||||||| ||||| ||||||||  ||  ||    
T  3998851 catggaaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccacttgattatttttttatactatcttttacactc 3998752  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  3998751 tctctttcatgtcc 3998738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 36750447 - 36750335
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || | |||||||||||||||| |||| ||   | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  36750447 catgggaaagttgatcatgttcattagattaaatgaggaacatatttctatcatactctctcaaccactagattatt-ttttatactatctttcacactc 36750349  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  36750348 tctctttcatgtcc 36750335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 38923675 - 38923562
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| || | |||||||||||||||| |||| ||   | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  38923675 catggaaaagttgataatgttcattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactc 38923576  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  38923575 tctctttcatgtcc 38923562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 44687173 - 44687060
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| |||| |||||||||||||||| || | || | | || |||||||| ||| | ||||||||| ||||| |||||||| |||  ||    
T  44687173 catggaaaagttgatcatattcattagattaaatgaggaaaatattcctatcatactctctcaaccattagattatttttttatactatctttcacactc 44687074  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  44687073 tctctttcatgtcc 44687060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 705 - 811
Target Start/End: Original strand, 52491930 - 52492037
Alignment:
Q  705 aaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatctctctt 803  Q
    ||||||||| || ||||||||||||||| || |||| ||   | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||||||||    
T  52491930 aaagttgatcatgtccattagattaaataaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctctt 52492029  T
Q  804 tcatgtcc 811  Q
    ||||||||    
T  52492030 tcatgtcc 52492037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 700 - 789
Target Start/End: Original strand, 19132602 - 19132692
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    |||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| | ||||||    
T  19132602 atgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatattatctt 19132692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 41755537 - 41755650
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    |||| |||| ||||| || | |||||||||||||||| |||| ||   | || |||||||| ||| |||| |||||| ||||| |||||||| |||  ||    
T  41755537 catgagaaaattgatcatgttcattagattaaatgaggaacatatttctatcatactctctcaaccactatattatttttttatactatctttcacactc 41755636  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  41755637 tctctttcatgtcc 41755650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 699 - 809
Target Start/End: Original strand, 27259 - 27368
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    ||||||||||||||| || |||||||||||||||||| |||| || ||| || |||||||| ||||||| |||||| ||||||||||||||||||| |||    
T  27259 catgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctcaacactaaattatt-ttttacactatcttccaccctct 27357  T
Q  799 ctctttcatgt 809  Q
    |||||||||||    
T  27358 ctctttcatgt 27368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 740
Target Start/End: Complemental strand, 27585 - 27544
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaaca 740  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  27585 catgggaaagttgatcatatccattagattaaatgaggaaca 27544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 703 - 809
Target Start/End: Complemental strand, 5035282 - 5035177
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctctct 802  Q
    ||||||||||| || |||||||||||||||||| || | || ||| || |||||||| ||||||| ||||| |||||||||||||||||||| |||||||    
T  5035282 ggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctcaacactaaattat-gttttacactatcttccaccctctctct 5035184  T
Q  803 ttcatgt 809  Q
    |||||||    
T  5035183 ttcatgt 5035177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 32536746 - 32536859
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||| | |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  32536746 catgggaaagttgatcatgtccattagattaaatggggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 32536845  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  32536846 tctctttcatgtcc 32536859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 34992274 - 34992161
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || ||||| |||||| ||||| |||||||| |||  ||    
T  34992274 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactaaattatttttttatactatctttcacactc 34992175  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  34992174 tctctttcatgtcc 34992161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 37639749 - 37639862
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| |||| |||||||||||||||| |||| || | | |  |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  37639749 catgggaaagttgatcatattcattagattaaatgaggaacatattcctatgatactctctcaaccactagattatttttttatactatctttcacactc 37639848  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  37639849 tctctttcatgtcc 37639862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 38023662 - 38023775
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||| ||||||||| || | |||||||||||||||| |||| ||   | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  38023662 catggaaaagttgatcatgttcattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactc 38023761  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  38023762 tctctttcatgtcc 38023775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 807
Target Start/End: Original strand, 41859348 - 41859457
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || ||| |||||||||||||  |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  41859348 catgggaaagttgatcatgtccgttagattaaatgaagaacatattcatatcatactctctcaaccactagattatttttttatactatctttcacactc 41859447  T
Q  798 tctctttcat 807  Q
    ||||||||||    
T  41859448 tctctttcat 41859457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 789
Target Start/End: Original strand, 5034936 - 5035027
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||||||||||| || ||||||||||| |||||| |||| || | | || |||||||| || |||||||||||| ||||| ||||||||    
T  5034936 catgggaaagttgatcatgtccattagattgaatgaggaacatattcatatcatactctctcaaccactagattatttttttatactatctt 5035027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 32537498 - 32537385
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    |||| ||||||| || || ||||||| ||||||| || |||| || ||| || |||||||| ||| ||||||||||| ||||| |||||||| | |  ||    
T  32537498 catgagaaagttaatcatgtccattatattaaataaggaacatattcttatcatactctctcaaccactagattatttttttatactatctttcgcactc 32537399  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  32537398 tctctttcatgtcc 32537385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 22579973 - 22580086
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| ||||||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  22579973 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaatcactagattatttttttatactatctttcacactc 22580072  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  22580073 tctctttcatgtcc 22580086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 15082435 - 15082548
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  15082435 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 15082534  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  15082535 tctctttcatgtcc 15082548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 699 - 809
Target Start/End: Complemental strand, 33480638 - 33480527
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  33480638 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 33480539  T
Q  798 tctctttcatgt 809  Q
    ||||||||||||    
T  33480538 tctctttcatgt 33480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 3542852 - 3542965
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || | |||||||||||||||| |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  3542852 catgggaaagttgatcatgttcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttaaactatctttcacactc 3542951  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  3542952 tctctttcatgtcc 3542965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 15083328 - 15083215
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    |||| |||||||||| ||||| ||||||||||||||| |||| || | | || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  15083328 catgagaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 15083229  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  15083228 tctctttcatgtcc 15083215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 703 - 811
Target Start/End: Original strand, 33018209 - 33018318
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatctctc 801  Q
    ||||||||||| || |||||||||||||||||| |||| ||  || || |||||||| || || ||||||||| ||||| |||||||| |||  ||||||    
T  33018209 ggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctcaaccattagattatttttttatactatctttcacactctctc 33018308  T
Q  802 tttcatgtcc 811  Q
    ||||||||||    
T  33018309 tttcatgtcc 33018318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 789
Target Start/End: Complemental strand, 3543073 - 3542982
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| | ||||||    
T  3543073 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatattatctt 3542982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 789
Target Start/End: Original strand, 7193376 - 7193464
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatctt 789  Q
    ||||||||||||||| || |||||||||||||||||| |||| || ||| || |||||||| |  || |||||||| ||||| ||||||||    
T  7193376 catgggaaagttgatcatctccattagattaaatgaggaacatattcttatcatactctctca--accagattatttttttatactatctt 7193464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 789
Target Start/End: Complemental strand, 33018426 - 33018335
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatctt 789  Q
    ||||||||||||||| || |||||||||||||||||| |||| ||   | || |||||||| || |||||||||||| ||||| ||||||||    
T  33018426 catgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctt 33018335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 33479734 - 33479848
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagatta-ttgttttacactatcttccaccat 796  Q
    ||||||||||||||| || |||||||||||||||||| |||| ||   | || |||||||| || |||||||||| || ||||| |||||||| |||  |    
T  33479734 catgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactagattattttttttatactatctttcacact 33479833  T
Q  797 ctctctttcatgtcc 811  Q
    |||| ||||||||||    
T  33479834 ctctatttcatgtcc 33479848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 22587320 - 22587207
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| ||   | |  ||||| || || |||||||||||| ||||| |||||||| |||  ||    
T  22587320 catgggaaagttgatcatgtccattagattaaatgaggaacatatttctattatactcactcaatcactagattatttttttatactatctttcacactc 22587221  T
Q  798 tctctttcatgtcc 811  Q
    |||||||| |||||    
T  22587220 tctctttcctgtcc 22587207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 735
Target Start/End: Complemental strand, 7193588 - 7193552
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgag 735  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7193588 catgggaaagttgatcatatccattagattaaatgag 7193552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 773
Target Start/End: Original strand, 24991360 - 24991428
Alignment:
Q  705 aaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattat 773  Q
    ||||||||||||| |||||||||||||||| ||| | ||  || || ||||| ||||||||||||||||    
T  24991360 aaagttgattatacccattagattaaatgaaaaatatattgttatcttactcacttaacactagattat 24991428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 740
Target Start/End: Complemental strand, 22582489 - 22582448
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaaca 740  Q
    ||||||||||||||| || |||||||||||||||||| ||||    
T  22582489 catgggaaagttgatcatgtccattagattaaatgaggaaca 22582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 21471964 - 21471851
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| ||||||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  21471964 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 21471865  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  21471864 tctctttcatgtcc 21471851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 702 - 811
Target Start/End: Original strand, 38834428 - 38834538
Alignment:
Q  702 gggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatctct 800  Q
    |||||||||||| || |||||||||||||||||| |||| ||  || || |||||||| ||| ||||||||||| ||||| |||||||| |||  |||||    
T  38834428 gggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctcaaccactagattatttttttatactatctttcacactctct 38834527  T
Q  801 ctttcatgtcc 811  Q
    |||||||||||    
T  38834528 ctttcatgtcc 38834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 4479712 - 4479601
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    |||||||||||| || || |||||||||||||||||| |||| || ||| || ||||||||  |||||| |||||| ||||| | |||||| || |||||    
T  4479712 catgggaaagttaatcatgtccattagattaaatgaggaacatattcttatcatactctctccacactaaattatt-ttttatattatctttcatcatct 4479614  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  4479613 ctctttcatgtcc 4479601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 21471055 - 21471168
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||  |||| || | | || |||||||| | | ||||||||||| ||||| |||||||| |||  ||    
T  21471055 catgggaaagttgatcatgtccattagattaaatgaagaacatattcctatcatactctctcagccactagattatttttttatactatctttcacactc 21471154  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  21471155 tctctttcatgtcc 21471168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 699 - 802
Target Start/End: Original strand, 37548036 - 37548140
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| || ||||| |||  ||    
T  37548036 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttataccatctttcacactc 37548135  T
Q  798 tctct 802  Q
    |||||    
T  37548136 tctct 37548140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 774
Target Start/End: Original strand, 14573299 - 14573374
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattatt 774  Q
    ||||||||||||||| || |||||||||||||||||| || | ||  || || |||||||| ||||||||||||||    
T  14573299 catgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatactctctcaacactagattatt 14573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 740
Target Start/End: Complemental strand, 14574004 - 14573968
Alignment:
Q  704 gaaagttgattatatccattagattaaatgagaaaca 740  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14574004 gaaagttgatcatatccattagattaaatgagaaaca 14573968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 699 - 809
Target Start/End: Original strand, 33001970 - 33002079
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatct 798  Q
    ||||| ||||||||| || |||||||||||||||||| || | || ||| || || ||||| ||||||| |||||| ||||||||||||||||||| |||    
T  33001970 catggaaaagttgatcatgtccattagattaaatgaggaatacattcttatcatattctctcaacactaaattatt-ttttacactatcttccaccctct 33002068  T
Q  799 ctctttcatgt 809  Q
    |||||||||||    
T  33002069 ctctttcatgt 33002079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 33002826 - 33002713
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  33002826 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 33002727  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  33002726 tctctttcatgtcc 33002713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 717 - 810
Target Start/End: Original strand, 42518808 - 42518899
Alignment:
Q  717 atccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctctctttcatgtc 810  Q
    ||||||||||||||||||||||||||| ||| || |||| ||| ||||||| |||||||||||| ||||| || ||||  ||||||||||||||    
T  42518808 atccattagattaaatgagaaacaaattcttatcgtactatctcaacactaaattattgttttatactatttttcacc--ctctctttcatgtc 42518899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 15184027 - 15183914
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||||||| || |||||||||||| |||||  ||||||| |||  ||    
T  15184027 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatgctatctttcacactc 15183928  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  15183927 tctctttcatgtcc 15183914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 700 - 811
Target Start/End: Complemental strand, 687357 - 687245
Alignment:
Q  700 atgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatct 798  Q
    |||| |||||||||||| |||||||||||||||||| |||| || | | || |||||||| || ||||| |||||| ||||| |||||||| |||  |||    
T  687357 atggaaaagttgattatgtccattagattaaatgaggaacatattcctatcatactctctcaatcactaaattatttttttatactatctttcacactct 687258  T
Q  799 ctctttcatgtcc 811  Q
    |||||||||||||    
T  687257 ctctttcatgtcc 687245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 701 - 811
Target Start/End: Original strand, 8040235 - 8040346
Alignment:
Q  701 tgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatctc 799  Q
    ||||||||||||| || |||||||||||||||||| || | || ||| || |||||||| || ||||| |||||| ||||| |||||||| |||  ||||    
T  8040235 tgggaaagttgatcatgtccattagattaaatgaggaatatattcttatcatactctctcaaccactacattatttttttatactatctttcacactctc 8040334  T
Q  800 tctttcatgtcc 811  Q
    ||||||||||||    
T  8040335 tctttcatgtcc 8040346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 686454 - 686567
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| || | || | | || || ||||| || |||||||||||| ||||| |||||||| |||  ||    
T  686454 catgggaaagttgatcatgtccattagattaaatgaggaatatattcctatcatattctctcaaccactagattatttttttatactatctttcacactc 686553  T
Q  798 tctctttcatgtcc 811  Q
    ||||||||||||||    
T  686554 tctctttcatgtcc 686567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 807
Target Start/End: Original strand, 8204158 - 8204267
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    ||||||||||||||| || |||||||||||||||||| |||| || | | || |||| ||| || |||||||||||| ||||| |||||||| |||  ||    
T  8204158 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactatctcaaccactagattatttttttatactatctttcacactc 8204257  T
Q  798 tctctttcat 807  Q
    ||||||||||    
T  8204258 tctctttcat 8204267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 811
Target Start/End: Original strand, 15183127 - 15183240
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagattattgttttacactatcttccaccatc 797  Q
    |||| |||||||||| || |||||||||||||||||| |||| ||   | || |||||||| || |||||||||||| ||||| |||||||| |||  ||    
T  15183127 catgagaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactc 15183226  T
Q  798 tctctttcatgtcc 811  Q
    || |||||||||||    
T  15183227 tcactttcatgtcc 15183240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 740
Target Start/End: Complemental strand, 12190168 - 12190127
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaaca 740  Q
    ||||||||||||||| || |||||||||||||||||| ||||    
T  12190168 catgggaaagttgatcatgtccattagattaaatgaggaaca 12190127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 170 - 56
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaa-cactagatta-ttgttttacactatcttccaccat 796  Q
    |||||||||||||||||| | |||||||||||||||| |||| || | | || |||||||| || |||||||||| || ||||| |||||||| |||  |    
T  170 catgggaaagttgattatgttcattagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacact 71  T
Q  797 ctctctttcatgtcc 811  Q
    |||||||||||||||    
T  70 ctctctttcatgtcc 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 703 - 811
Target Start/End: Original strand, 5361 - 5466
Alignment:
Q  703 ggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaacactagattattgttttacactatcttccaccatctctct 802  Q
    ||||||| |||||||||||||||||||||||||||||| || ||| ||||||||| |  | ||||||||||| |||||   ||||||||||   ||||||    
T  5361 ggaaagtagattatatccattagattaaatgagaaacacattcttatcctactctttccatactagattatt-ttttatgatatcttccac--actctct 5457  T
Q  803 ttcatgtcc 811  Q
    |||||||||    
T  5458 ttcatgtcc 5466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 804
Target Start/End: Complemental strand, 9268 - 9162
Alignment:
Q  699 catgggaaagttgattatatccattagattaaatgagaaacaaatccttttcctactctcttaac-actagattattgttttacactatcttccaccatc 797  Q
    ||||| |||||| || || |||||||||||||||||  |||| || ||| || |||||||| ||| ||||||||||| ||||| |||||||| |||  ||    
T  9268 catggaaaagttcatcatgtccattagattaaatgatgaacatattcttatcatactctctcaaccactagattatttttttatactatctttcacactc 9169  T
Q  798 tctcttt 804  Q
    |||||||    
T  9168 tctcttt 9162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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