View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20022_low_10 (Length: 446)

Name: NF20022_low_10
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20022_low_10
NF20022_low_10
[»] chr1 (10 HSPs)
chr1 (17-438)||(2487532-2487953)
chr1 (72-134)||(7218113-7218175)
chr1 (71-120)||(15361681-15361730)
chr1 (72-126)||(25006081-25006135)
chr1 (71-129)||(30257651-30257709)
chr1 (69-145)||(9656616-9656693)
chr1 (77-126)||(27887165-27887214)
chr1 (71-120)||(28467360-28467409)
chr1 (77-129)||(17269224-17269276)
chr1 (99-131)||(39348009-39348041)
[»] chr5 (1 HSPs)
chr5 (71-126)||(34205207-34205262)
[»] chr4 (3 HSPs)
chr4 (71-126)||(49219107-49219162)
chr4 (71-145)||(51630079-51630154)
chr4 (85-125)||(11842197-11842237)
[»] chr7 (3 HSPs)
chr7 (69-119)||(49060506-49060556)
chr7 (73-120)||(24909634-24909681)
chr7 (73-117)||(24895326-24895370)
[»] chr3 (4 HSPs)
chr3 (71-129)||(21872315-21872373)
chr3 (77-125)||(24235731-24235779)
chr3 (71-125)||(37689432-37689486)
chr3 (77-127)||(53848109-53848158)
[»] chr2 (4 HSPs)
chr2 (71-129)||(43141839-43141897)
chr2 (71-126)||(11513866-11513921)
chr2 (71-129)||(43199382-43199440)
chr2 (94-122)||(20258486-20258514)
[»] chr6 (4 HSPs)
chr6 (71-127)||(4006682-4006738)
chr6 (69-129)||(18264295-18264355)
chr6 (57-118)||(27595622-27595683)
chr6 (57-129)||(2514656-2514728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (71-126)||(27544-27599)
[»] chr8 (3 HSPs)
chr8 (57-126)||(1470903-1470972)
chr8 (71-128)||(34770860-34770917)
chr8 (72-128)||(29973050-29973106)


Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 2487953 - 2487532
Alignment:
Q  17 atcaaaatcatttaaatccgtgtttgtataaacaacttaattctataatgataaataaagtaaagtcaaattatttggatataagctataagttattttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487953 atcaaaatcatttaaatccgtgtttgtataaacaacttaattctataatgacaaataaagtaaagtcaaattatttggatataagctataagttattttc 2487854  T
Q  117 ataaactatcctgcagaattttgaaaataggaaacaatggaaataacataaacatgccttggttgacagattcaggaggactaatttgactgctcgaact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487853 ataaactatcctgcagaattttgaaaataggaaacaatggaaataacataaacatgccttggttgacagattcaggaggactaatttgactgctcgaact 2487754  T
Q  217 actttgaagatcagaagaaatactcatcgttattccactcgaagaaacacttctccgcgaccgagcttcactatgatccttttcaaaagtgctgctgctc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487753 actttgaagatcagaagaaatactcatcgttattccactcgaagaaacacttctccgcgaccgagcttcactatgatccttttcaaaagtgctgctgctc 2487654  T
Q  317 cagaagcctgatgatccatcatctttagtcacggtttggccttgaattatttctcccttacatccctcatccattgaaacagtagctcgaggtttttcgc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2487653 cagaagcctgatgatccatcatctttagtcacggtttggccttgaattatttctcccttacatccctcatccattgaaacagtagcttgaggtttttcgc 2487554  T
Q  417 ggcttctaagacaacctatgct 438  Q
    ||||||||||||||||||||||    
T  2487553 ggcttctaagacaacctatgct 2487532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 7218175 - 7218113
Alignment:
Q  72 taaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgcagaa 134  Q
    |||| |||||||||||| |||  |||||||||||||||| ||||||||| |||||||| ||||    
T  7218175 taaaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaa 7218113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 15361681 - 15361730
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataa 120  Q
    ||||||||||||||||||||||  |||||||||||||| | |||||||||    
T  15361681 ataaagtaaagtcaaattattttcatataagctataagctgttttcataa 15361730  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 25006135 - 25006081
Alignment:
Q  72 taaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 126  Q
    |||| |||||||||||| |||  |||||||||||||||| ||||||||| |||||    
T  25006135 taaaataaagtcaaattgttttcatataagctataagttgttttcataagctatc 25006081  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 30257651 - 30257709
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 129  Q
    ||||| |||||||||| | |||  ||||||||| |||||| ||||||||||||||||||    
T  30257651 ataaaataaagtcaaactgtttccatataagctttaagttgttttcataaactatcctg 30257709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 9656616 - 9656693
Alignment:
Q  69 aaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgca-gaattttgaaaata 145  Q
    ||||||| |||||| |||||||||  |||||||||||||| | | ||||||| |||||||| | ||||| ||||||||    
T  9656616 aaataaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggatgaattatgaaaata 9656693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 27887214 - 27887165
Alignment:
Q  77 taaagtcaaattatttggatataagctataagttattttcataaactatc 126  Q
    ||||||||||  ||||  |||||||||||||||| |||||||||||||||    
T  27887214 taaagtcaaacaatttccatataagctataagttgttttcataaactatc 27887165  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 28467409 - 28467360
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataa 120  Q
    ||||| ||||||||||||||||  |||||||||| ||||| |||||||||    
T  28467409 ataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 17269224 - 17269276
Alignment:
Q  77 taaagtcaaattatttggatataagctataagttattttcataaactatcctg 129  Q
    |||||||||||| |||  |||||||| ||||||| ||||||||| ||||||||    
T  17269224 taaagtcaaattgttttcatataagcaataagttgttttcataagctatcctg 17269276  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 39348041 - 39348009
Alignment:
Q  99 aagctataagttattttcataaactatcctgca 131  Q
    |||||||||||| ||||||||||||||||||||    
T  39348041 aagctataagttgttttcataaactatcctgca 39348009  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 34205207 - 34205262
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 126  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||| |||||    
T  34205207 ataaagtaaagtcaaattatttttatataagctataagttgttttcataagctatc 34205262  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 49219107 - 49219162
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 126  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  49219107 ataaaataaagtcaaattattttcatataagctataagttgttttcataaactatc 49219162  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 51630079 - 51630154
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgcagaattt-tgaaaata 145  Q
    ||||| |||||| ||||| ||| ||||||||||||||| ||||||||||| ||||| || ||||||| ||||||||    
T  51630079 ataaaataaagttaaattgttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaata 51630154  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 11842197 - 11842237
Alignment:
Q  85 aattatttggatataagctataagttattttcataaactat 125  Q
    ||||||||  |||||||||||||||| ||||||||||||||    
T  11842197 aattattttcatataagctataagttgttttcataaactat 11842237  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 49060506 - 49060556
Alignment:
Q  69 aaataaagtaaagtcaaattatttggatataagctataagttattttcata 119  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  49060506 aaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 24909634 - 24909681
Alignment:
Q  73 aaagtaaagtcaaattatttggatataagctataagttattttcataa 120  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||    
T  24909634 aaagtaaagtcaaattattttcatataagctataagttgttttcataa 24909681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 24895326 - 24895370
Alignment:
Q  73 aaagtaaagtcaaattatttggatataagctataagttattttca 117  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||    
T  24895326 aaagtaaagtcaaattattttcatataagctataagttgttttca 24895370  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 21872373 - 21872315
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 129  Q
    ||||| ||| |||||||| ||| ||||||||||||||||| ||||||||| ||||||||    
T  21872373 ataaaataaggtcaaatttttttgatataagctataagttgttttcataagctatcctg 21872315  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 24235779 - 24235731
Alignment:
Q  77 taaagtcaaattatttggatataagctataagttattttcataaactat 125  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  24235779 taaagtcaaactatttgaatataagctataagttgttttcataagctat 24235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 37689486 - 37689432
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactat 125  Q
    |||||||||||| |||||||||  |||||||||||||  ||||||||||| ||||    
T  37689486 ataaagtaaagttaaattattttcatataagctataaactattttcataagctat 37689432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 53848158 - 53848109
Alignment:
Q  77 taaagtcaaattatttggatataagctataagttattttcataaactatcc 127  Q
    |||||||||||| ||| ||||||||||| | ||||||||||||||||||||    
T  53848158 taaagtcaaattgttttgatataagctaca-gttattttcataaactatcc 53848109  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 43141839 - 43141897
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 129  Q
    |||||||||||||||||| |||  |||||||||||||| | ||||||||| ||||||||    
T  43141839 ataaagtaaagtcaaattgtttccatataagctataagatgttttcataagctatcctg 43141897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 11513866 - 11513921
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 126  Q
    ||||| |||||||||||| |||  |||||||||||||||| ||||||||| |||||    
T  11513866 ataaaataaagtcaaattgttttcatataagctataagttgttttcataagctatc 11513921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 43199382 - 43199440
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 129  Q
    ||||| |||||| ||||||| |   ||||||||||||||| ||||||||||||||||||    
T  43199382 ataaaataaagttaaattatcttcgtataagctataagttgttttcataaactatcctg 43199440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 20258486 - 20258514
Alignment:
Q  94 gatataagctataagttattttcataaac 122  Q
    |||||||||||||||||||||||||||||    
T  20258486 gatataagctataagttattttcataaac 20258514  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 4006682 - 4006738
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcc 127  Q
    ||||| |||||||||||| |||  |||||||||||||||| ||||||||| ||||||    
T  4006682 ataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatcc 4006738  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 18264295 - 18264355
Alignment:
Q  69 aaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 129  Q
    |||||||||||||||||||| |||  ||| ||| |||||| ||||||| ||||||||||||    
T  18264295 aaataaagtaaagtcaaattgttttcatacaagttataagctattttcttaaactatcctg 18264355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 27595683 - 27595622
Alignment:
Q  57 ttctataatgataaataaagtaaagtcaaattatttggatataagctataagttattttcat 118  Q
    ||||||||| | | ||||| ||||||||||||||||  ||||||||| ||||||| ||||||    
T  27595683 ttctataataaaagataaaataaagtcaaattattttcatataagctgtaagttaatttcat 27595622  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 2514656 - 2514728
Alignment:
Q  57 ttctataatgataaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 129  Q
    ||||||||| | | ||||| |||||||||| || ||  |||| ||||||||||||||||||||| || |||||    
T  2514656 ttctataataaaagataaaataaagtcaaactaattttatatgagctataagttattttcataagctgtcctg 2514728  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 27544 - 27599
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 126  Q
    ||||| |||||||||||| |||  |||||| ||||||||| |||||||||||||||    
T  27544 ataaaataaagtcaaattgttttcatataaactataagttgttttcataaactatc 27599  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 1470972 - 1470903
Alignment:
Q  57 ttctataatgataaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 126  Q
    ||||||||| | | ||||| ||||||||||||| ||  |||||||||||||| | ||||||||| |||||    
T  1470972 ttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcataacctatc 1470903  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 34770860 - 34770917
Alignment:
Q  71 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcct 128  Q
    ||||| |||||||||||| |||  || ||||||||||||| ||||||||| |||||||    
T  34770860 ataaaataaagtcaaattgttttcatttaagctataagttgttttcataagctatcct 34770917  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 29973050 - 29973106
Alignment:
Q  72 taaagtaaagtcaaattatttggatataagctataagttattttcataaactatcct 128  Q
    |||| |||||||||| |||||  | |||||||||||||| ||||||||| |||||||    
T  29973050 taaaataaagtcaaactattttcacataagctataagttgttttcataagctatcct 29973106  T

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