View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_12 (Length: 430)
Name: NF20022_low_12
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 33480460 - 33480872
Alignment:
| Q |
18 |
gacgtaactttaaaaggttcaacatccaaattgcctaaggaggtggaagaaagcgcgaagaatgaacaaaggaaagtgcaaattacatttgccttattaa |
117 |
Q |
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| T |
33480460 |
gacgtaactttaaaaggttcaacaaccaaattgcctaaggaggtggaagaaagcgtgaagaatgaacaaaggaaagtgcaaattacatttgccttattaa |
33480559 |
T |
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| Q |
118 |
ttcatctccaagcccaaatgaaaatgggattgttgcatagtggatcaatgaaatacgaagtttcatgccaagtaacggtggatacattggcaagagtcaa |
217 |
Q |
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| T |
33480560 |
ttcatctccaagcccaaatgaaaatgggattgttgcatagtggatcaatgaaatacgaagtttcatgccaagtaacggtggatacattggcaagaatcaa |
33480659 |
T |
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| Q |
218 |
tcgtcaagtaacggtggatacaatggcaaaaaacaatcgtgtagtttctcaacattgtcaaactaaacgacactagttattgtagcaattgaatagctcg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33480660 |
tcgtcaagtaacggtggatacaatggcaaaaaacaatcgtgtagtttctcaacaatgtcaaactaaacgacactagttattgtagcaattgaatagctcg |
33480759 |
T |
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| Q |
318 |
aaaaaattcaggtgttgtaaattttgaatgatttttccattctatattgattcgcttaatcttgacataacatacattttttgttggcgattgaaaattt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33480760 |
aaaaaattcaggtgttgtaaattttgaatgatttttccattctatattaattcacttaatcttgacacaacatacattttttgttggcgattgaaaattt |
33480859 |
T |
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| Q |
418 |
tatacataagctt |
430 |
Q |
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|||| |||||||| |
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| T |
33480860 |
tatagataagctt |
33480872 |
T |
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