View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_14 (Length: 396)
Name: NF20022_low_14
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 201 - 379
Target Start/End: Complemental strand, 53752347 - 53752170
Alignment:
| Q |
201 |
tttttaaaatgaacgacgcgttcaatattggaaaatgctacgcaatcgaatatagaaactggtttgctggctaattacgaagtggttacagtttcatccc |
300 |
Q |
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| T |
53752347 |
tttttaaaatgaacgacgcgttcaatattggaaaatgctacgcaatc-aatatagaaactggtttgctggctaattacgaagtggttacagtttcatccc |
53752249 |
T |
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| Q |
301 |
ccaaatattcttactagagtacagatttaatcgtcaaacttggattagcggcaatgaaacaaatttactcctttatgac |
379 |
Q |
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| T |
53752248 |
ccaaatattcttactagaatacagatttaatcgtcaaacttggattggcggcaatgaaacaaatttactcctttatgac |
53752170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 53752494 - 53752353
Alignment:
| Q |
16 |
atgcttcaagaatacaaatgtggttctagcattggagatgttaggaatggattcaaatga-tcttcaagctagt-aaaaaacaagaactactcaacnnnn |
113 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
53752494 |
atgcttgaagaatacaaatatggttctagcattggagatgttaggaatggattcaaatgattctccaagctagtaaaaaaacaagaactactcaactttt |
53752395 |
T |
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| Q |
114 |
nnngtggtctagtctctatcacatagtagtccccactcccac |
155 |
Q |
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| T |
53752394 |
tttgtggtctagtctctatcacatagtagtccccactcccac |
53752353 |
T |
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