View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_16 (Length: 344)
Name: NF20022_low_16
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 76 - 344
Target Start/End: Complemental strand, 9453682 - 9453413
Alignment:
| Q |
76 |
gattgaggtaatgaattactattttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggca |
175 |
Q |
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| T |
9453682 |
gattgaggtaatgaattactattttaaaaatgattacataagcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacataaaaatggca |
9453583 |
T |
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| Q |
176 |
ccaaaa-cttttgaacttggcatacaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataact |
274 |
Q |
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|||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9453582 |
ccaaaaacttttgaacttggtatacaacatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatctatggaataact |
9453483 |
T |
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| Q |
275 |
atttactactccctatgatttactgcataacatgatcatgtgtnnnnnnntaatgtgccaaaaacaaagc |
344 |
Q |
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| T |
9453482 |
atttactattccctatgatttactgcataacatgatcgtgtgtaaaaaaattatgtgccaaaaacaaagc |
9453413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 38944146 - 38944365
Alignment:
| Q |
98 |
tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat |
197 |
Q |
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| T |
38944146 |
tttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaaattttcaaacttagcat |
38944245 |
T |
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| Q |
198 |
acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccctatgatttac |
297 |
Q |
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| T |
38944246 |
actgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccctatgatttac |
38944345 |
T |
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| Q |
298 |
tgcataacatgatcatgtgt |
317 |
Q |
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| T |
38944346 |
tgcatagcatgatcttgtgt |
38944365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 28127171 - 28127045
Alignment:
| Q |
149 |
ttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcatacaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtg |
248 |
Q |
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| T |
28127171 |
ttttgaaaaatctgcctagaaattgcacctaaactttcaaacttagcacactacataaaaattgttttcacattttgataagcaaacaaatctatccgtg |
28127072 |
T |
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| Q |
249 |
tagaaattcacatttatggaataacta |
275 |
Q |
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|||| | |||||| |||||||||||| |
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| T |
28127071 |
tagatactcacatccatggaataacta |
28127045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 98 - 288
Target Start/End: Original strand, 21545071 - 21545261
Alignment:
| Q |
98 |
tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat |
197 |
Q |
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|||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
21545071 |
tttaaaaacaattacataggctacgaaaaataaattatatatggtatcatgttttgaaaaacctacataaaaatgccaccaaaacttttgaacttggcat |
21545170 |
T |
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| Q |
198 |
acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccct |
288 |
Q |
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| T |
21545171 |
actaaatataaaccgcgttcgcattttgataagcgaacaaatctatccgtgtagaaattcacatctattgaataactacttactactccct |
21545261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 18328648 - 18328866
Alignment:
| Q |
98 |
tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat |
197 |
Q |
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|||||||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| ||| ||||| |||| |
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| T |
18328648 |
tttaaaaatgattacataggtgagaaaaaataaatcatatatgatatcatgttttgaaaaacctacattgaaatgacaccaaaattttcaaacttagcat |
18328747 |
T |
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| Q |
198 |
acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccctatgatttac |
297 |
Q |
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|||| || |||| |||||| |||||||||| |||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
18328748 |
acaacatttaaaatgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccctatgatttac |
18328847 |
T |
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| Q |
298 |
tgcataacatgatcatgtgt |
317 |
Q |
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|||| |||||||| ||||| |
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| T |
18328848 |
agcat-acatgatcttgtgt |
18328866 |
T |
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