View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_17 (Length: 336)
Name: NF20022_low_17
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 180 - 333
Target Start/End: Original strand, 42643870 - 42644023
Alignment:
| Q |
180 |
tattattgcatagctataaagaactatgtttttcaccttcaatcaatccatatagaaccaaaaagctgaaaaggaattaatcaagttagggccttttgcc |
279 |
Q |
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| T |
42643870 |
tattattgcatagctataaagaactatgtttttcaccttcaatcaatccatatagaaccaaaaagctgaaaaggaattaatcaagttagggccttttgcc |
42643969 |
T |
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| Q |
280 |
agtaaatgatcatttcttgttgaaaattttgatactggacatgtctcttttcat |
333 |
Q |
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| T |
42643970 |
agtaaatgatcatttcttgttgaaaattttgatactggacatgtctcttttcat |
42644023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 42643736 - 42643866
Alignment:
| Q |
19 |
cgactagtatatgtaacaacatgcctaattgggcagcaggtagaaatccaagtcaaaaatgggtccatatattctggaatatttcatgcaacagatacag |
118 |
Q |
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| T |
42643736 |
cgactagtatatgtaacaacatgcctaattgggcagcaggtagaaatccaagtcaaaaatgggtccatatactctggaatatttcatgcaacagatacag |
42643835 |
T |
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| Q |
119 |
acaaagattttggtatgttcttctattagta |
149 |
Q |
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| T |
42643836 |
acaaagattttggtatgttcttctattagta |
42643866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 6910581 - 6910463
Alignment:
| Q |
19 |
cgactagtatatgtaacaacatgcctaattgggcagcaggtagaaatccaagtcaaaaatgggtccatatattctggaatatttcatgcaacagatacag |
118 |
Q |
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| T |
6910581 |
cgactagtatatttaacaacatgccttattgggcaccaggtggaagtccaggtgaaaaatggatctatatactccggaatatttcatgctacaaataccg |
6910482 |
T |
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| Q |
119 |
acaaagattttggtatgtt |
137 |
Q |
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| T |
6910481 |
agaaagattttggtatgtt |
6910463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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