View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20022_low_2 (Length: 735)
Name: NF20022_low_2
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 252 - 726
Target Start/End: Complemental strand, 50804057 - 50803581
Alignment:
| Q |
252 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804057 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacat |
50803958 |
T |
|
| Q |
352 |
attctttcattgaaactttaaaaagtcataaaaa--tgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50803957 |
attctttcattgaaactttaaaaagtcataaaaaaatgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttc |
50803858 |
T |
|
| Q |
450 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgannnnn |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50803857 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgattttt |
50803758 |
T |
|
| Q |
550 |
nncctttcttggccaccactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50803757 |
ttcctttcttggccaccactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
50803658 |
T |
|
| Q |
650 |
tacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattgtttatattctt |
726 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
50803657 |
tacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttctt |
50803581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 252 - 726
Target Start/End: Original strand, 50871820 - 50872296
Alignment:
| Q |
252 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871820 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacat |
50871919 |
T |
|
| Q |
352 |
attctttcattgaaactttaaaaagtcataaaaa--tgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871920 |
attctttcattgaaactttaaaaagtcataaaaaaatgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttc |
50872019 |
T |
|
| Q |
450 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgannnnn |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50872020 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgattttt |
50872119 |
T |
|
| Q |
550 |
nncctttcttggccaccactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50872120 |
ttcctttcttggccaccactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
50872219 |
T |
|
| Q |
650 |
tacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattgtttatattctt |
726 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
50872220 |
tacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttctt |
50872296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 50804260 - 50804051
Alignment:
| Q |
19 |
aaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctagagtgtttcagagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50804260 |
aaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctagagtgtttcagagat |
50804161 |
T |
|
| Q |
119 |
gtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgctgcagagggatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50804160 |
gtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgctgcagagggatg |
50804061 |
T |
|
| Q |
219 |
tttcagtacc |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
50804060 |
tttcagtacc |
50804051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 50871617 - 50871826
Alignment:
| Q |
19 |
aaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctagagtgtttcagagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50871617 |
aaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctagagtgtttcagagat |
50871716 |
T |
|
| Q |
119 |
gtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgctgcagagggatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871717 |
gtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgctgcagagggatg |
50871816 |
T |
|
| Q |
219 |
tttcagtacc |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
50871817 |
tttcagtacc |
50871826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 252 - 720
Target Start/End: Original strand, 5286344 - 5286814
Alignment:
| Q |
252 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacat |
351 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5286344 |
cagtaccaatgtcaatctctgtacctgtaatatagtggtataatactttttctgtatttgtaattgttacgttcacaatttttattggaagtttttacag |
5286443 |
T |
|
| Q |
352 |
attctttcattgaaactttaaaaagtcataaaaa--tgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttc |
449 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5286444 |
attctttaattgaaactttataaagtcataaaaaaatgtcaccaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttag-ttc |
5286542 |
T |
|
| Q |
450 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttg-gtcatatttggtttcatgannnn |
548 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
5286543 |
atcacatgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttgtgtcatatttggttttatgatttt |
5286642 |
T |
|
| Q |
549 |
nnncctttcttggccaccactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatga |
648 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5286643 |
tttcctttcttggctaccactgcatattaattttaatggtcccaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatga |
5286742 |
T |
|
| Q |
649 |
ttacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattgtttat |
720 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5286743 |
ttacaatggggcctaactgtgctcatgccatcatttcatttgaatgtaaaccattctgcttgcattttttat |
5286814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 5286142 - 5286350
Alignment:
| Q |
19 |
aaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctagagtgtttcagagat |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5286142 |
aaggcaccagctattgccggattacttcaaaccctattatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctagagtgtttcagagat |
5286241 |
T |
|
| Q |
119 |
gtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgctgcagagggatg |
218 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5286242 |
gtgaaaatgcatctctgcattacggtggattaggtgtaggctatgcatttgctagcaattcagctcaaactagagattcaagctttgctgcag-gggatg |
5286340 |
T |
|
| Q |
219 |
tttcagtacc |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
5286341 |
tttcagtacc |
5286350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 450 - 726
Target Start/End: Original strand, 19058054 - 19058330
Alignment:
| Q |
450 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgannnnn |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19058054 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgattttt |
19058153 |
T |
|
| Q |
550 |
nncctttcttggccaccactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19058154 |
ttcctttcttggccaccactgcatattaatcttaatggtcccaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
19058253 |
T |
|
| Q |
650 |
tacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattgtttatattctt |
726 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
19058254 |
tacaatggggcctaactgtgctcataccatcatttcatttgaatgcaaatcattctgcttgcattttttattttctt |
19058330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 19057927 - 19058025
Alignment:
| Q |
19 |
aaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctagagtgtttcagaga |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19057927 |
aaggcaccagctattgccggattacttcaaaccctactatttaccgggacaaagtgagctagacgtaaagccgcttcacttgctagagtgtttcagaga |
19058025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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