View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20022_low_21 (Length: 314)

Name: NF20022_low_21
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20022_low_21
NF20022_low_21
[»] chr7 (1 HSPs)
chr7 (13-307)||(27331698-27331983)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 27331983 - 27331698
Alignment:
Q  13 aatattaattgttggatcatattagataatctacctcaataattgtgtgaatgtgaggggttgaatagttcaactgattttaagtattagttaaatgagt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27331983 aatattagttgttggatcatattagataatctacctcaataattatgtgaatgtgaggggttgaatagttcaactgattttaagtattagttaaatgagt 27331884  T
Q  113 tgaacaaattaaaagatagaatagattaacatataaggaataaaatattaacttaacaattaaccgccaaacatttgtctataa-nnnnnnnncttcata 211  Q
    |||||||||||||||||||| ||||||          ||| ||||||||||| |||||||||||||||||||||||||||||||         |||||||    
T  27331883 tgaacaaattaaaagatagagtagatt----------gaagaaaatattaacataacaattaaccgccaaacatttgtctataatttttttttcttcata 27331794  T
Q  212 aatgtgagaaatttgttttcttaattatgagtcattttgttctctagagtcatgtgatgtttagaggaagtaaacaaaaggaagagaagcatatat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27331793 aatgtgagaaatttgttttcttaattatgagtcattttgttctctagagtcatgtgatgtttagaggaagtaaacaaaaggaagagaagcatatat 27331698  T

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