View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_22 (Length: 313)
Name: NF20022_low_22
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 38567787 - 38568098
Alignment:
| Q |
1 |
ggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgattttgacccacttttaaacctcaaaat |
100 |
Q |
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| T |
38567787 |
ggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgattttgacccacttttaaacctcaaatt |
38567886 |
T |
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| Q |
101 |
tattgttcaacacacttttgcatgaattttacgttcaatttttagccacagtcaatttttgttactgtagaaccaaactcacactta---------gaag |
191 |
Q |
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| T |
38567887 |
tattgttcaacacacttttgcatgaattttacgttcaacttttagccacagtcaatttttgttactgcagaaccaaactcacacttagaagttattgaag |
38567986 |
T |
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| Q |
192 |
tttgcaaatttacttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagcc |
291 |
Q |
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| T |
38567987 |
tttgcaaatttacttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgcgcagcttttgcataagcagtttgacctttagaagcc |
38568086 |
T |
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| Q |
292 |
atcctgcctatg |
303 |
Q |
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| T |
38568087 |
atcctgcctatg |
38568098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 38526859 - 38526957
Alignment:
| Q |
205 |
ttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatg |
303 |
Q |
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| T |
38526859 |
ttctaacagcataccgttcttattgagccaatggtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatg |
38526957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 7262988 - 7263060
Alignment:
| Q |
5 |
tgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgatttt |
77 |
Q |
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|||||||||||| ||| ||||||||||||| ||| ||||| || || ||||||| || | |||| |||||||| |
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| T |
7262988 |
tgaggcaaaattgattctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttt |
7263060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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