View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_25 (Length: 266)
Name: NF20022_low_25
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25994339 - 25994581
Alignment:
| Q |
1 |
aaagtcaaacatgaggctagtttggctatagaagatcttgttcctcgtgagaaaacaaagaaggctttgttagcacgtggttttgacatgcttggttact |
100 |
Q |
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| T |
25994339 |
aaagttaaacatgaggctagtttggctattgaagatcttgttcctcgtgagaaaacaaagaaggctttgttagcacgtggttttgacatgcttggttact |
25994438 |
T |
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| Q |
101 |
cactcaactcgcttaggttaacgaatatgaaattttgtgacaccaaagcaacgaggttttcacaagtggtaaggttgcaacttaatcaagatgacactaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25994439 |
cactcaactcacttaggttaacgaatatgaaattttgtgacaccaaagcaacgaggttttcacaagtggtaaggttgcaacttaatcaagatgacactaa |
25994538 |
T |
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| Q |
201 |
gggggttctagctgtaagctccttaattaccatttctatatat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25994539 |
gggggttctagctgtaagctccttaattaccatttctatatat |
25994581 |
T |
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