View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_3 (Length: 711)
Name: NF20022_low_3
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 353 - 566
Target Start/End: Complemental strand, 28864078 - 28863865
Alignment:
| Q |
353 |
ccactttaattcacaattgtaaatttgtaaccagaattcagagaagttgaatatttttctccctgccctattatattttaaaattgtctaccactttcac |
452 |
Q |
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| T |
28864078 |
ccactttaattcacaattgtaaatttgtaaccagaattcagagaagttgaatatttttctccctgccctattatattttaaaattgtctaccactttcac |
28863979 |
T |
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| Q |
453 |
acatcttttccaatacaaaagaacttgaatattcttttctccctgccctatattctccaaccttcaaaaccaatacataaatgaaacgaaatcaacacaa |
552 |
Q |
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| T |
28863978 |
acatcttttccaatacaaaagaacttgaatattcttttctccctgccctatattctccaaccttcaaaaccaatacataaatgtaacgaaatcaacacaa |
28863879 |
T |
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| Q |
553 |
aagatgtcaccaag |
566 |
Q |
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| T |
28863878 |
aagatgtcaccaag |
28863865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 28864402 - 28864181
Alignment:
| Q |
18 |
gaaggtttataaagtaatcaattcatggttttatgatttaaaaatccaagatttctttgacaaaatttgctaagtcaactagcaatcatatgatcaaaat |
117 |
Q |
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| T |
28864402 |
gaaggtttataaagtaatcaattaatggtttt--gatttaaaaatccaagatttctttgacaaaatttgctaagtcaactagcaatcatatgatcaaaat |
28864305 |
T |
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| Q |
118 |
ggttgatagtaacaccacccttttctaatttctactacaatggactattgttgatgtatgtattctatggggaataaaaatcaagaaaactattcaacta |
217 |
Q |
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| T |
28864304 |
ggttgatagtaacaccacccttttctaatttctactacaatggactattgttgatgtatgtattctatggggaataaaaatcaagaaaactattcaacta |
28864205 |
T |
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| Q |
218 |
tcatcctacaaatttacagtttga |
241 |
Q |
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| T |
28864204 |
tcatcctacaaatttacagtttga |
28864181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 28863799 - 28863733
Alignment:
| Q |
632 |
tatgtagcagtattaaatgataaaatgaataaaatacctcatgataatttactgttacgacccccct |
698 |
Q |
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| T |
28863799 |
tatgtagcagtattaaatgataaaatgaataaaatacctcatgataatttactgttacgacccccct |
28863733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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