View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_34 (Length: 228)
Name: NF20022_low_34
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 48210200 - 48210004
Alignment:
| Q |
17 |
agacacaaggaggatttgttttgactccattaagctcatctatggaagaaattgctgcnnnnnnnttataaccacatttacttaaattaattagacttaa |
116 |
Q |
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| T |
48210200 |
agacacaaggaggatttgttttgactccattaagctcatctatggaagaaattgctgcaaaaaaattataaccacatttacttaaattaattagacttaa |
48210101 |
T |
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| Q |
117 |
aaacatagaatgaaatcatttgacatcattaatagatgaaatctagaatatatacacataccttgatgattaatctctcctccgttgacgaggatat |
213 |
Q |
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| T |
48210100 |
aaacatagaatgaaatcatttgacatcattaatagatgaaatctagaatatatacacataccttgatgattaatctctcctccgttgacgaggatat |
48210004 |
T |
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