View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20022_low_35 (Length: 213)

Name: NF20022_low_35
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20022_low_35
NF20022_low_35
[»] chr4 (1 HSPs)
chr4 (19-199)||(1013242-1013422)
[»] chr7 (5 HSPs)
chr7 (20-112)||(47799258-47799350)
chr7 (20-74)||(6900-6954)
chr7 (20-74)||(48955193-48955247)
chr7 (43-91)||(29006373-29006421)
chr7 (43-91)||(29007173-29007221)
[»] chr5 (3 HSPs)
chr5 (20-93)||(43588316-43588389)
chr5 (20-74)||(5766815-5766869)
chr5 (21-117)||(4608542-4608638)
[»] chr6 (1 HSPs)
chr6 (20-93)||(21983256-21983329)
[»] chr3 (2 HSPs)
chr3 (20-93)||(20313382-20313455)
chr3 (20-93)||(49144755-49144828)
[»] chr8 (1 HSPs)
chr8 (20-89)||(42112483-42112552)
[»] chr1 (4 HSPs)
chr1 (20-117)||(14285858-14285955)
chr1 (29-74)||(42645372-42645417)
chr1 (45-117)||(30466931-30467003)
chr1 (46-94)||(37423053-37423101)
[»] chr2 (2 HSPs)
chr2 (20-74)||(2501800-2501854)
chr2 (69-117)||(5278324-5278372)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 1013422 - 1013242
Alignment:
Q  19 aagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactttactgtcccaggttaaatgtcaccg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1013422 aagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcctatggtgggaaaaaactttactgtcccaggttaaatgtcaccg 1013323  T
Q  119 tgaaaatatgatatctttctgttatgtctcatgcctatttatagccaaggaggtctttactctttaacactcaattatatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1013322 tgaaaatatgatatctttctgttatgtctcatgcctatttatagccaaggaggtctttactctttaacactcaattatatt 1013242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 47799350 - 47799258
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactttactgtcccaggttaaatg 112  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||  ||| ||||||||||||| |||  |||||| ||||||    
T  47799350 agaccatgataagatcaatacacctctttaatctaatggtaaaaatcaaactttcccatgatgggaaaaaacttcacttacccaggctaaatg 47799258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 6954 - 6900
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 74  Q
    |||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  6954 agactatgataagatcaatacacctctttaatctaatggtgaaaatccaactttc 6900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 48955193 - 48955247
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 74  Q
    |||||||  ||||||||||||| ||||||||||| |||||||||||| |||||||    
T  48955193 agaccattataagatcaatacacctctttaatctgatggtaaaaatcaaactttc 48955247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 29006421 - 29006373
Alignment:
Q  43 ctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaac 91  Q
    ||||||||||||||||| |||| | |||||||  |||||||||||||||    
T  29006421 ctctttaatctaatggttaaaaactaactttcccatggtgggaaaaaac 29006373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 29007173 - 29007221
Alignment:
Q  43 ctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaac 91  Q
    ||||||||||||||||| |||| | |||||||  |||||||||||||||    
T  29007173 ctctttaatctaatggttaaaaactaactttcccatggtgggaaaaaac 29007221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 43588389 - 43588316
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactt 93  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||| ||||||  ||||||||||||| ||||    
T  43588389 agaccatgataagatcaatagacctctttaatctaatggtaaaaatctaactttactatggtgggaaaagactt 43588316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 5766815 - 5766869
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 74  Q
    |||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  5766815 agaccattataagatcaatacacctctttaatctgatggtaaaaatccaactttc 5766869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 4608542 - 4608638
Alignment:
Q  21 gaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactttactgtcccaggttaaatgtcacc 117  Q
    ||||||||||||||||||||| ||| ||||||||||||  |||    |||||||  ||||||||||| ||| || || |||||| ||||||| ||||    
T  4608542 gaccatggtaagatcaatacatctcattaatctaatggctaaatctaaactttcccatggtgggaaataacattcctttcccagattaaatggcacc 4608638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 21983256 - 21983329
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactt 93  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||| ||| ||||  ||| |||||||||||||    
T  21983256 agaccatgataagatcaatacacctctttaatctaatggtagaaattcaaatttcccatgatgggaaaaaactt 21983329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 20313382 - 20313455
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactt 93  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||| ||||  ||| |||||||| ||||    
T  20313382 agaccattataagatcaatacacctctttaatctaatggtaaaaatccaattttcccatgatgggaaaatactt 20313455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 49144828 - 49144755
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactt 93  Q
    |||||||| || |||||||||| ||||||||||||||| ||||||| |||||||  |||| |||||||||||||    
T  49144828 agaccatgatatgatcaatacacctctttaatctaatgataaaaattcaacttttctatgttgggaaaaaactt 49144755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 42112483 - 42112552
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaa 89  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |  |||||||  ||||||| |||||    
T  42112483 agaccatggtaagatcaatacacctctttaatctattggtaaaattttaactttcccatggtggaaaaaa 42112552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 14285858 - 14285955
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactttactgtcccaggttaaatgtcacc 117  Q
    |||||||| |||| |||||||| || |||||||||||||||||||||  |||||   || |||||||| |||||||||| ||||   |||||||||||    
T  14285858 agaccatgataagttcaatacacctgtttaatctaatggtaaaaatctgacttttccattgtgggaaacaactttactgacccatactaaatgtcacc 14285955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 42645417 - 42645372
Alignment:
Q  29 taagatcaatacagctctttaatctaatggtaaaaatccaactttc 74  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  42645417 taagatcaatacacctctttaatctaatggtgaaaatccaactttc 42645372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 30466931 - 30467003
Alignment:
Q  45 ctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactttactgtcccaggttaaatgtcacc 117  Q
    ||||||||||||||||||||| ||||||||  ||| ||||| ||||| | |||| || ||| |||||| ||||    
T  30466931 ctttaatctaatggtaaaaattcaactttcccatgatgggagaaaacatcactgccctaggctaaatgccacc 30467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 37423053 - 37423101
Alignment:
Q  46 tttaatctaatggtaaaaatccaactttcttatggtgggaaaaaacttt 94  Q
    ||||||||| ||||| |||| ||||||||  ||||||||||||||||||    
T  37423053 tttaatctagtggtagaaattcaactttcccatggtgggaaaaaacttt 37423101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 2501854 - 2501800
Alignment:
Q  20 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 74  Q
    |||||||| ||||||||||||| || ||||||| |||||||||||| ||||||||    
T  2501854 agaccatgataagatcaatacacctttttaatcaaatggtaaaaattcaactttc 2501800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 5278324 - 5278372
Alignment:
Q  69 actttcttatggtgggaaaaaactttactgtcccaggttaaatgtcacc 117  Q
    ||||| |||||||||||||||| || | |||||||||||||||| ||||    
T  5278324 acttttttatggtgggaaaaaatttcattgtcccaggttaaatgccacc 5278372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University