View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_4 (Length: 627)
Name: NF20022_low_4
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 227 - 453
Target Start/End: Original strand, 36904461 - 36904687
Alignment:
| Q |
227 |
acacctacgcttagtaaaacaaggagctaccgacaatatcagtaacagagaaaaa-tcatccaacataatttatgtccttcatattccataannnnnnng |
325 |
Q |
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| T |
36904461 |
acacctgcgcttagcaaaacaaggagctactgacaatatcagcaacagagaaaaaatcatccaacataatttatgtccttcatattccataattttattg |
36904560 |
T |
|
| Q |
326 |
tattaaaaaattgtgactacacaaagtagcatctcaaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagt |
425 |
Q |
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| T |
36904561 |
tatcaaaaaattgtgactacacaa-gtagcatctcaaaatgcataattgtttacacaacccaacataaaagaataactcatagttgcattacaccaaagt |
36904659 |
T |
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| Q |
426 |
cacaacataatggctgcctgataggtct |
453 |
Q |
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| T |
36904660 |
cacaacataatggctgcttgataggtct |
36904687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 36903926 - 36903980
Alignment:
| Q |
128 |
tggattaggacatttaaccctttcggttatgtaacttgcacatatattgcagact |
182 |
Q |
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| T |
36903926 |
tggattaggacatttaaccctgtcagttatgtaacttgaacatatattgcagact |
36903980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 523 - 561
Target Start/End: Original strand, 36904761 - 36904799
Alignment:
| Q |
523 |
ttgagaggtagttaggccaaataagacatgctgcctata |
561 |
Q |
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| T |
36904761 |
ttgagaggtagttaggccaaataagacatgctgcctata |
36904799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 36904355 - 36904391
Alignment:
| Q |
183 |
acagtggaaaactctcacgactcacgaccttctcttg |
219 |
Q |
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| T |
36904355 |
acagtggaaaactctcgcgactcacaaccttctcttg |
36904391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 7685016 - 7685134
Alignment:
| Q |
334 |
aattgtgactacacaaagtagcatctcaaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagtcacaacat |
433 |
Q |
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| T |
7685016 |
aattgtgactacacaa-gtagcatctcaaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagtcacaacat |
7685114 |
T |
|
| Q |
434 |
aatggctgcctgataggtct |
453 |
Q |
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| T |
7685115 |
aatggctgcctgataggtct |
7685134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 518 - 617
Target Start/End: Original strand, 7685199 - 7685294
Alignment:
| Q |
518 |
ctgagttgagaggtagttaggccaaataagacatgctgcctatatataaatagaccctagtcaaagaggtcgtggtttggtccgtacttatggtgttcat |
617 |
Q |
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| T |
7685199 |
ctgagttgagaggtagttaagccaaataagacatgctgcctata----aatagaccctagtcaaagaggtcgtggtttggtcggtacttatggtgttcat |
7685294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 7684977 - 7685017
Alignment:
| Q |
277 |
aaaaatcatccaacataatttatgtccttcatattccataa |
317 |
Q |
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|
| T |
7684977 |
aaaaatcatccaacataatttatgtccttcatattccataa |
7685017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 617
Target Start/End: Original strand, 16101748 - 16101793
Alignment:
| Q |
572 |
ccctagtcaaagaggtcgtggtttggtccgtacttatggtgttcat |
617 |
Q |
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| T |
16101748 |
ccctagtcaaagaggttgtggtttggtccgtacttatggcgttcat |
16101793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 609
Target Start/End: Original strand, 38979240 - 38979280
Alignment:
| Q |
569 |
agaccctagtcaaagaggtcgtggtttggtccgtacttatg |
609 |
Q |
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| T |
38979240 |
agaccctagtcaaagaggtcgtggtttggtctgcacttatg |
38979280 |
T |
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