View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_6 (Length: 490)
Name: NF20022_low_6
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Original strand, 37346360 - 37346822
Alignment:
| Q |
11 |
gaagaaaatgagctcacaaggatatcaattgcttgttctatggaaattgttccagtctctgctaaatccatctcaatatcctaacattgaaacatatttc |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37346360 |
gaagaatatgagctcacaaggatatcaattgcttgttctatggaaattgttccagtctctgataaatccatctcaatatcctaacattgaaacatatttc |
37346459 |
T |
|
| Q |
111 |
aaaattatttatatgtttgaatatgttgtaatactaatcatggttactaaatcaacttacctgatcaaaatccttgtttatagttttaagtaaatgatcg |
210 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346460 |
aaaatcatttatatgtttgaatatgttgtaatactaatcaatgttactaaatcaacttacctgatcaaaatccttgtttatagttttaagtaaatgatcg |
37346559 |
T |
|
| Q |
211 |
gatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattggaacaaaaacagaattaatcactaaatggtcatcaattatatata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346560 |
gatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattggaacaaaaacagaattaatcactaaatggtcatcaattatatata |
37346659 |
T |
|
| Q |
311 |
attgaatattaacattnnnnnnnnnnttaatcctaacctcagatgcagcagaagcaggtccaaagtaaactgttttaccagaagacaaaagacaaagatt |
410 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346660 |
attgaatattaacatt-aaaaaaaaattaatcctaacctcagatgcagcagaagcaggtccaaagtaaactgttttaccagaagacaaaagacaaagatt |
37346758 |
T |
|
| Q |
411 |
atggaaaagttgaaaaacttcagtacttggttgatggattgaggcaacaatggtcctttgaatt |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346759 |
atggaaaagttgaaaaacttcagtacttggttgatggattgaggcaacaatggtcctttgaatt |
37346822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 169 - 474
Target Start/End: Complemental strand, 37343519 - 37343218
Alignment:
| Q |
169 |
acctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattggaa |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || | |||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
37343519 |
acctgatcaaaatccttgtttatagttttaagtaaatgatcagatgggttttggagagaaggacaaggaaatccattaaaagcaaaaa-ctacattggaa |
37343421 |
T |
|
| Q |
269 |
caaaaacagaattaatcactaaatggtcatcaattatatataattgaatattaacattnnnnnnnnnnttaatcctaacctcagatgcagcagaagcagg |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||| |||||||||||||||||||||||||| |
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| T |
37343420 |
caaaaacagaattaatcactaaatggtcatcaattaattataattgaa-ataaacat----gaaacaattaattctaacctcagatgcagcagaagcagg |
37343326 |
T |
|
| Q |
369 |
tccaaagtaaactgttttaccagaagacaaaagacaaagattatggaaaagttgaaaaacttcagtacttgg--ttgatggattgaggcaacaatggtcc |
466 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||| || ||||||||||||||||| |||||||| |
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| T |
37343325 |
tccaatgtaaactgttttaccagaagacaagagacaaagattatgaaaaagttgaaaagcttcattactaggttttgatggattgaggcaataatggtcc |
37343226 |
T |
|
| Q |
467 |
tttgaatt |
474 |
Q |
| |
|
|||||||| |
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|
| T |
37343225 |
tttgaatt |
37343218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 37322325 - 37322207
Alignment:
| Q |
168 |
tacctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattgga |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||| | |
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| T |
37322325 |
tacctgatcaaaatccttgtttatagttttaagtaaatgatcagaaggattttgtagaggaggacatggaaatccattcaaagcaaaaaactacattgaa |
37322226 |
T |
|
| Q |
268 |
acaaaaacagaattaatca |
286 |
Q |
| |
|
||||||||| ||| ||||| |
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|
| T |
37322225 |
acaaaaacaaaatcaatca |
37322207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 37331302 - 37331183
Alignment:
| Q |
167 |
ttacctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattgg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||| ||||| |
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| T |
37331302 |
ttacctgatcaaaatccttgtttatagttttaagcaaatgatcagatggattttgtagaggaggacaaggaaatccattcaaagcaaaaaactgcattga |
37331203 |
T |
|
| Q |
267 |
aacaaaaacagaattaatca |
286 |
Q |
| |
|
||||||| || ||| ||||| |
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|
| T |
37331202 |
aacaaaagcaaaatcaatca |
37331183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 474
Target Start/End: Complemental strand, 37330912 - 37330783
Alignment:
| Q |
345 |
aacctcagatgcagcagaagcaggtccaaagtaaactgttttaccagaagacaaaagacaaagattatggaaaagttgaaaaacttcagtacttggttga |
444 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||| ||||| || |||||||||||||||||||| |||||| |
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|
| T |
37330912 |
aacctcacatgcagcataagcaggtccaaagtaaactgttctacctgaagacagaagacaaaggttatgaaagagttgaaaaacttcagtactaggttga |
37330813 |
T |
|
| Q |
445 |
tggattgaggcaacaatggtcctttgaatt |
474 |
Q |
| |
|
||||| || | || ||| |||||||||||| |
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| T |
37330812 |
tggatggatgtaataattgtcctttgaatt |
37330783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 341 - 449
Target Start/End: Complemental strand, 37321994 - 37321886
Alignment:
| Q |
341 |
tcctaacctcagatgcagcagaagcaggtccaaagtaaactgttttaccagaagacaaaagacaaagattatggaaaagttgaaaaacttcagtacttgg |
440 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||||||||||||| |||| ||||||| |||||| || ||||| ||||||||||||||||||||||| || |
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| T |
37321994 |
tcctaacctcacaagcagtagaagcaggtccaaagtaaactgttctacctgaagacagaagacataggttatgaaaaagttgaaaaacttcagtactagg |
37321895 |
T |
|
| Q |
441 |
ttgatggat |
449 |
Q |
| |
|
||||||||| |
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|
| T |
37321894 |
ttgatggat |
37321886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 19544192 - 19544310
Alignment:
| Q |
168 |
tacctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattgga |
267 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
19544192 |
tacctgatcaaagtctttgtttatagttttaagtaaatgatcagatgggttttggagaggaggacaaggaaaaccattcattgcaaaaaactacattgaa |
19544291 |
T |
|
| Q |
268 |
acaaaaacagaattaatca |
286 |
Q |
| |
|
|||||| |||||| ||||| |
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|
| T |
19544292 |
acaaaaccagaatcaatca |
19544310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 449
Target Start/End: Original strand, 19544524 - 19544632
Alignment:
| Q |
341 |
tcctaacctcagatgcagcagaagcaggtccaaagtaaactgttttaccagaagacaaaagacaaagattatggaaaagttgaaaaacttcagtacttgg |
440 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || | |||| ||||| | ||||||||| || || ||||||||||||||||| |||| || |
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|
| T |
19544524 |
tcctaacctcagttgcagcagaagcaggtccaaagtatacaagtctacctgaagagagaagacaaaggttgtgaaaaagttgaaaaacttcggtaccagg |
19544623 |
T |
|
| Q |
441 |
ttgatggat |
449 |
Q |
| |
|
||||||||| |
|
|
| T |
19544624 |
ttgatggat |
19544632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 37291435 - 37291348
Alignment:
| Q |
387 |
accagaagacaaaagacaaagattatggaaaagttgaaaaacttcagtacttggttgatggattgaggcaacaatggtcctttgaatt |
474 |
Q |
| |
|
||||||||||| ||||||||| | ||| ||||||| ||||| |||| | || ||||||||||| || ||||||| |||||||||||| |
|
|
| T |
37291435 |
accagaagacagaagacaaaggtcatgaaaaagttcaaaaagttcactgctaggttgatggatggatacaacaatagtcctttgaatt |
37291348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 37298525 - 37298467
Alignment:
| Q |
415 |
aaaagttgaaaaacttcagtacttggttgatggattgaggcaacaatggtcctttgaat |
473 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| || || |||||||| ||||||||||| |
|
|
| T |
37298525 |
aaaagttgaaaaacttcactactaggctgatgtatggatgcaacaattgtcctttgaat |
37298467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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