View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20022_low_8 (Length: 482)
Name: NF20022_low_8
Description: NF20022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20022_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 151 - 291
Target Start/End: Complemental strand, 1802292 - 1802156
Alignment:
| Q |
151 |
ggatgagacactgcctaccactcagtatcaagttcgttccaagaaggcggaggggattcaaaaactaaatgttgcattttatttttattttcgtttaatg |
250 |
Q |
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| T |
1802292 |
ggatgagacattgtctaccactcagtatcaagttc----caagaaggcggaggggtttcagaaactaaatgttgcattttatttttattttggtttaatg |
1802197 |
T |
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| Q |
251 |
taaacggtgaattgatgaatgttagtatgtaattacctaaa |
291 |
Q |
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| T |
1802196 |
taaatggtgaattaatgaatgttactatgtaattacctaaa |
1802156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 1801950 - 1801914
Alignment:
| Q |
429 |
acacctcaaattctcctatatctatattcagcgcatt |
465 |
Q |
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| T |
1801950 |
acacttcaaattctcctatatctatattcagcgcatt |
1801914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 11649920 - 11649985
Alignment:
| Q |
257 |
gtgaattgatgaatgttagtatgtaattacctaaacaattatttgcactttcgaatgaatgaattt |
322 |
Q |
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| T |
11649920 |
gtgaattggtgaatgttagtatgcaaacacctaaaaagttattcgcattttcgcatgaatgaattt |
11649985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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