View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20023_high_4 (Length: 343)
Name: NF20023_high_4
Description: NF20023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20023_high_4 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 25065 - 25354
Alignment:
| Q |
29 |
caccatgctcttcaggttcgattaaactcccatttcattaatttccaacaagttttgcttcaattaactccttgaatctatgaaaatgattattttttgt |
128 |
Q |
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| T |
25065 |
caccatgctcttcaggttcgattaaactcccattccattaattatcaacaagttttgcttcaattaactccttgaatctatgaaaat-attattttttgt |
25163 |
T |
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| Q |
129 |
ttctttaactggtgtttcagggacacccgttggcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttt |
228 |
Q |
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| T |
25164 |
ttctttaactggtgtttcaggggcacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttt |
25263 |
T |
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| Q |
229 |
ttcgggatggaattagataacagaaagaataaagataaggtggagacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
319 |
Q |
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| T |
25264 |
ttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
25354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 39821 - 39945
Alignment:
| Q |
192 |
cttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtgga---gacaattgatctaatg |
288 |
Q |
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| T |
39821 |
cttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtgaaaagtacaagtgatctaatg |
39920 |
T |
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| Q |
289 |
gatgggttgatgcaaattgaagatg |
313 |
Q |
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| T |
39921 |
gatgggttgatgcaaattgaagatg |
39945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 32435 - 32558
Alignment:
| Q |
190 |
tacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggagacaattgatctaatgg |
289 |
Q |
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|||| |||||||||||||||||||||| | || ||| | || ||||||||||||| || ||||| | || ||||||| || |||| ||||||||||| |
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| T |
32435 |
tactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatgg |
32534 |
T |
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| Q |
290 |
atgggttgatgcaaattgaagatg |
313 |
Q |
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| T |
32535 |
atgggttgatgcaaattgaagatg |
32558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 181 - 319
Target Start/End: Complemental strand, 5008 - 4870
Alignment:
| Q |
181 |
taacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggagacaattg |
280 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
5008 |
taacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaaacaattg |
4909 |
T |
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| Q |
281 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
319 |
Q |
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| T |
4908 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
4870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 5103 - 5023
Alignment:
| Q |
29 |
caccatgctcttcaggttcgattaaactcccatttcattaatttccaacaagttttgcttcaattaactccttgaatctat |
109 |
Q |
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| T |
5103 |
caccatgctcttcaggttccattaaactcccatttaattaatcatcaacaagttttgcttcaattaactccttgaatctat |
5023 |
T |
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