View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20023_high_6 (Length: 325)
Name: NF20023_high_6
Description: NF20023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20023_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1653736 - 1653424
Alignment:
| Q |
1 |
tcacatagaacaaaccaacgcacatctgagagaccaaggcgaaagctttctttgataatgcgagaaatccggaggccagaagggtgacctatgggattag |
100 |
Q |
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| T |
1653736 |
tcacataggacaaaccaacgcacatctgagagaccaaggcgaaagctttctttgataatgcgagaaatccggaggccagaagggtgacctatgggattag |
1653637 |
T |
|
| Q |
101 |
tgtaacggaagtacgaaatgtctccagaaatcatggtagggggtaataactcatctccatgttcttcaaccactttttcctctaaccagacatggccacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1653636 |
tgtaacggaagtacgaaatgtctccagaaatcatggtagggggtaataactcatctccatgttcttcaaccactttttcctctaaccacacatggccacg |
1653537 |
T |
|
| Q |
201 |
catgtcattgggacgccaccatagtctaatatattccttcctccgtttccaaagctgagatgatccagctatgccaaaaacaatatgttgaactgacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1653536 |
catgtcattgggacgccaccatagtctaatatattccttcctccgtttccaaagctgagatgatccagctatgccaaaaacaatatgttgaactgacaaa |
1653437 |
T |
|
| Q |
301 |
ccttcttgttctg |
313 |
Q |
| |
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||||||||||||| |
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| T |
1653436 |
ccttcttgttctg |
1653424 |
T |
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