View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20023_high_7 (Length: 323)

Name: NF20023_high_7
Description: NF20023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20023_high_7
NF20023_high_7
[»] chr5 (1 HSPs)
chr5 (2-310)||(6705304-6705612)
[»] chr3 (7 HSPs)
chr3 (4-306)||(21566226-21566524)
chr3 (4-306)||(39685787-39686085)
chr3 (4-235)||(44430700-44430931)
chr3 (4-306)||(13839904-13840202)
chr3 (4-258)||(53813937-53814186)
chr3 (89-137)||(11423435-11423483)
chr3 (158-224)||(24902167-24902233)
[»] chr6 (4 HSPs)
chr6 (15-306)||(25403199-25403486)
chr6 (67-221)||(2030052-2030206)
chr6 (4-57)||(34131300-34131353)
chr6 (4-43)||(2029989-2030028)
[»] chr2 (1 HSPs)
chr2 (4-310)||(942414-942716)
[»] chr1 (4 HSPs)
chr1 (12-306)||(49030829-49031118)
chr1 (154-306)||(28445846-28445994)
chr1 (89-224)||(48957010-48957145)
chr1 (4-55)||(28445795-28445846)
[»] scaffold0246 (1 HSPs)
scaffold0246 (23-310)||(2026-2309)
[»] chr4 (4 HSPs)
chr4 (11-303)||(628697-628985)
chr4 (172-306)||(51719153-51719283)
chr4 (67-198)||(38653298-38653429)
chr4 (86-127)||(42704950-42704991)
[»] scaffold0262 (1 HSPs)
scaffold0262 (4-224)||(8873-9093)
[»] chr8 (2 HSPs)
chr8 (11-280)||(9387093-9387358)
chr8 (89-224)||(12947479-12947613)
[»] chr7 (2 HSPs)
chr7 (159-306)||(41799148-41799291)
chr7 (86-161)||(1326623-1326698)
[»] scaffold0041 (1 HSPs)
scaffold0041 (156-306)||(24070-24216)
[»] scaffold0251 (1 HSPs)
scaffold0251 (86-127)||(16789-16830)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 6705304 - 6705612
Alignment:
Q  2 gtttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccagga 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6705304 gtttctaccgtgtatcccatcctctcatcgtcaaccctgctctagagcatgacattgtcatgccgagacctgtgtaccaggatattcttgttgactagga 6705403  T
Q  102 gtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactc 201  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  6705404 gtgggccatacatcctcccgatccattgcaggtcatcaacagcatgagagacagagtggagcatgcgatgcagatttcagaggtggtttcaaatccactc 6705503  T
Q  202 ttctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgag 301  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6705504 ttctttggcattttggagggccttcggaccgattgattataacgtgtttgaccatcagcaggtttcgaggaggaggtctaggagtcatagtccgcatgag 6705603  T
Q  302 cagcaacag 310  Q
    |||||||||    
T  6705604 cagcaacag 6705612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 21566226 - 21566524
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 103  Q
    ||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  21566226 ttctaccgtgtatgccatcctcttatcgtcaaccctgctcaagagcctgacattttcatgccgagacctgtctaccaggatattcttgttgaccaggagt 21566325  T
Q  104 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 203  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||||  ||||||||||||||||| |||||||| |||||||||||| ||||||| ||    
T  21566326 gggccagacatcctcctgatccattgcaagtcatcaacaacatgagaggcagagtggagcatgcgatgcagattcctgaggtggtttcaaatccactttt 21566425  T
Q  204 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 303  Q
    |||  |||||||||||||||| | || |    |||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  21566426 cttcagcattttggagggcctacagacc----gattatagcgtgtttgaccatcagcaggttctgaggaggaggtctaggagtcatagtccacatgagca 21566521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 39686085 - 39685787
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 103  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  39686085 ttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcgtgccgagacctgtgtaccaggatattcatgttgaccaggagt 39685986  T
Q  104 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 203  Q
    ||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| || ||||||||||||||||||| | ||||||||||    
T  39685985 gggtcagacatcctcccgatccattgcaggtcatcaacaacatcagaggtagagtggagcatgccatgcagattccagaggtggttttaaatccactctt 39685886  T
Q  204 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 303  Q
    |||| |||| |||||| |||| || | |    |||||||  ||||||||| ||||| |||| |||||||||||||||||||||||||| ||||| |||||    
T  39685885 ctttagcatcttggagagcctccgaacc----gattatagcgtgtttgacgatcagtaggtaccgaggaggaggtctaggagtcatagcccgcaggagca 39685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 44430931 - 44430700
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 103  Q
    ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44430931 ttctaccgtgtatcccatcctctcatcgtcaaccctgctccatagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgactaggagt 44430832  T
Q  104 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 203  Q
    |||||||||||||||||||||||||||||||||| | || ||| ||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  44430831 gggccagacatcctcccgatccattgcaggtcatcagcagcattagaggcagagtggagcatgcgatgcagattccagaggtggtttcaaatccactctt 44430732  T
Q  204 ctttggcattttggagggccttcggatcgatt 235  Q
    |||  |||| ||||||||||| |||| |||||    
T  44430731 cttcagcatcttggagggcctccggaccgatt 44430700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 13839904 - 13840202
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  13839904 ttctaccgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctatgtaccaggatattcttgttgaccagtagt 13840003  T
Q  104 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 203  Q
    |||| |||||||||||||||||||| ||| |||| | || ||| |||   | |||| |||||||||| || |||| ||||||||||||| ||| ||| ||    
T  13840004 gggctagacatcctcccgatccattccagatcatcagcagcattagaagcatagtgtagcatgcgatgcacattcgagaggtggtttcaaatctactatt 13840103  T
Q  204 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 303  Q
    |||  |||| ||||| ||||| | || |    ||||| |  ||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  13840104 cttcagcatcttggaaggcctccagacc----gattacagcgtgtttgacgatcagcaggttccaaggaagaggtctaggagtcatagtccgcaggagca 13840199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 53813937 - 53814186
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 103  Q
    |||||| ||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  53813937 ttctatagtgtatctcctcctctcatcgtcaaccttgctccagagcctgacattgtcatgccgagacctgtctactaggatattattgttgaccaggagt 53814036  T
Q  104 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 203  Q
    ||||||||||||||||| |||||||||||||||| | || ||||||||| ||||||||||||||||| ||||||| |||||||| |||| ||||| ||||    
T  53814037 gggccagacatcctcccaatccattgcaggtcatcagcagcatgagagacagagtggagcatgcgatgcagattctagaggtgg-ttcaaatccattctt 53814135  T
Q  204 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatca 258  Q
    ||||||||||||||||||||| | || |    ||||||| |||||||||||||||    
T  53814136 ctttggcattttggagggcctccagacc----gattatagtgtgtttgaccatca 53814186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 11423483 - 11423435
Alignment:
Q  89 ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcat 137  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  11423483 ttgttgagcaggagtgggccagacatcctcccgatccattccaggtcat 11423435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 24902167 - 24902233
Alignment:
Q  158 tggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggcct 224  Q
    |||||||||| ||  ||||||  |||||||||||| ||||||| || ||| ||||||||||||||||    
T  24902167 tggagcatgcaatggagattcttgaggtggtttcaaatccactattttttagcattttggagggcct 24902233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 25403199 - 25403486
Alignment:
Q  15 atcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccagacat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||    
T  25403199 atcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtctaccaggaaattcttgttgaccaagagtggaccagacat 25403298  T
Q  115 cctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattt 214  Q
    |||||||| |||||||||||||| | |||||||||||| ||||||||||||| ||| ||||||||||||||||||||  |||||||||||||   ||| |    
T  25403299 cctcccgacccattgcaggtcatcagcaacatgagagacagagtggagcatgtgatgcagattccagaggtggtttctaatccactcttcttcaacatct 25403398  T
Q  215 tggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 306  Q
    | |||||| | |  | |    |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  25403399 tagagggcatccaaacc----gattataacgtgtttgacgatcagcaggttccgaggaggaggtataggagtcatagtccgcaggagtagca 25403486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 2030052 - 2030206
Alignment:
Q  67 agacctgtgtaccaggatattcttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatg 166  Q
    |||||||| ||||| ||  || ||||||| |||||||||| || ||||||||| ||||||||||||||||| |||||||||||||   ||||||||||||    
T  2030052 agacctgtctaccaagaggttattgttgagcaggagtgggtcaaacatcctcctgatccattgcaggtcatcaacaacatgagagtccgagtggagcatg 2030151  T
Q  167 cgatacagattccagaggtggtttcatatccactcttctttggcattttggaggg 221  Q
    ||||  ||||||||||||||| |||| |||||||||| ||   ||||||||||||    
T  2030152 cgatggagattccagaggtggcttcaaatccactctttttcaacattttggaggg 2030206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 34131300 - 34131353
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacatt 57  Q
    ||||| ||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  34131300 ttctaccgtgtatcccatcctcttatcgtcaaccctcctccagagcctgacatt 34131353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 2029989 - 2030028
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctc 43  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  2029989 ttctaccgtgtatcccatcctcttatcgtcaaccctgctc 2030028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 310
Target Start/End: Original strand, 942414 - 942716
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 103  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  942414 ttctaccgtgtatcccatcctctcatcgtcaaccatgctccagagcctgacattgtcatgccgaggcctgtctaccaggatattcttgttgaccaggagt 942513  T
Q  104 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 203  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||||||||   ||||||||||    
T  942514 gggctagacatcctcccgaccctttgcaggtcatcaacaacatgagaggcagagtggagcatgcgatgcaaattccagaggtggtttttaatccactctt 942613  T
Q  204 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 303  Q
    |||   ||| || |||||||| | || |    |||||||  ||||||||| |||| || ||||||||||||||||||||||||||||||| ||| |||||    
T  942614 cttcaacatcttagagggcctccagacc----gattatagcgtgtttgacgatcaacaagttccgaggaggaggtctaggagtcatagtctgcaggagca 942709  T
Q  304 gcaacag 310  Q
     ||||||    
T  942710 acaacag 942716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 49031118 - 49030829
Alignment:
Q  12 tgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccaga 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  49031118 tgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcatgctgagacctgtctaccaggatattcttattgaccaggagcgggccaga 49031019  T
Q  112 catcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggca 211  Q
    ||||||||||| |||||||| ||||| | || ||||||||  ||||||||||||||||| ||||||||||||||||||||  |||||||||||||   ||    
T  49031018 catcctcccgacccattgcatgtcatcagcagcatgagaggcagagtggagcatgcgatccagattccagaggtggtttctaatccactcttcttcaaca 49030919  T
Q  212 ttttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 306  Q
    | || |||||||| |||| |    |||||||  ||||||||| ||||||||||| |||||||||||||||||||||||| |||||| || |||||    
T  49030918 tcttagagggcctccggacc----gattatagcgtgtttgacgatcagcaggtt-cgaggaggaggtctaggagtcataatccgcaggaccagca 49030829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 306
Target Start/End: Original strand, 28445846 - 28445994
Alignment:
Q  154 agagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgac 253  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||| |    |||||||  |||||||||    
T  28445846 agagtgaagcatgcgatgcagattccagaggtggtttcaaatccactcttctttgacattttggagggcctctggacc----gattatagcgtgtttgac 28445941  T
Q  254 catcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 306  Q
    |||||||| |||||||||| ||||||||||||||||| |||||| ||| ||||    
T  28445942 catcagcatgttccgaggacgaggtctaggagtcatattccgcaggagtagca 28445994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 48957010 - 48957145
Alignment:
Q  89 ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggt 188  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||  | |||||||||  ||||  ||||||||||||||||    
T  48957010 ttgttgagcaggagtgggctagacatcctcccgatccattgcaggtcatcaacagcatgagagtcaaagtggagcagacgatggagattccagaggtggt 48957109  T
Q  189 ttcatatccactcttctttggcattttggagggcct 224  Q
    |||| |||||||||| ||  ||||||||||||||||    
T  48957110 ttcacatccactctttttcagcattttggagggcct 48957145  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 28445795 - 28445846
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgaca 55  Q
    ||||| |||||||||||||||||||||||  ||||||||| || ||||||||    
T  28445795 ttctaccgtgtatcccatcctctcatcgttgaccctgctccagcgcctgaca 28445846  T

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Target: scaffold0246 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 2026 - 2309
Alignment:
Q  23 ctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccagacatcctcccga 122  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2026 ctctcatcgtcaaccctgctccagaacctgacattgtcatgccgagacctgtctaccaggatattcttgttgaccaggagtgggccagacatcctcccga 2125  T
Q  123 tccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggc 222  Q
     || ||||||||||| |||| ||||||||  ||||||||||||| |||  ||||||||| |||||||||  ||||| |||||||  |||| || ||||||    
T  2126 ccctttgcaggtcatcaacagcatgagaggcagagtggagcatgtgatgaagattccaggggtggtttctaatccattcttcttcagcatcttagagggc 2225  T
Q  223 cttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagcaacag 310  Q
    || |||| |||||    |||  ||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||    
T  2226 ctccggaccgatt----atagcgtgtttgacgatcagcaggttccgaggaggaagtctaggggtcattgtccgcaggagcagcaacag 2309  T

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Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 628985 - 628697
Alignment:
Q  11 gtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccag 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||  | ||||||||||||||||||||| || ||||||||||    
T  628985 gtgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcatgtcaagacccttctaccaggatattcttgttgactagtagtgggccag 628886  T
Q  111 acatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggc 210  Q
    |||||||| ||| || |||||||||||   || ||||||||  ||| ||||||||||||| ||||||||||||||||||||  |||||||||||||  ||    
T  628885 acatcctctcgaccctttgcaggtcatccgcagcatgagaggcagattggagcatgcgatgcagattccagaggtggtttctaatccactcttcttcagc 628786  T
Q  211 attttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 303  Q
    |  |||||||| || |||| |    |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  628785 aacttggaggggctccggacc----gattatagcgtgtttgacgatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 628697  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 306
Target Start/End: Original strand, 51719153 - 51719283
Alignment:
Q  172 cagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgagg 271  Q
    ||||||||||||||||||||| |||||||||||||  |||| ||||||||||| |||| |||||    |||  ||||||||| |||| ||||||||||||    
T  51719153 cagattccagaggtggtttcaaatccactcttcttaagcatcttggagggcctccggaccgatt----atagcgtgtttgacgatcatcaggttccgagg 51719248  T
Q  272 aggaggtctaggagtcatagtccgcatgagcagca 306  Q
    ||||||||||||| ||||||||| || ||||||||    
T  51719249 aggaggtctaggactcatagtccacaggagcagca 51719283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 38653298 - 38653429
Alignment:
Q  67 agacctgtgtaccaggatattcttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatg 166  Q
    |||||||| ||||||||  || ||||||| || ||||||||||||||||||||||| ||||| ||| ||||   |||||| ||||  ||| ||| |||||    
T  38653298 agacctgtctaccaggaggttattgttgagcaagagtgggccagacatcctcccgacccattccagatcatcggcaacatcagagccagactggcgcatg 38653397  T
Q  167 cgatacagattccagaggtggtttcatatcca 198  Q
    | ||  ||||||| |||| ||||||| |||||    
T  38653398 caatggagattcctgaggaggtttcaaatcca 38653429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 42704991 - 42704950
Alignment:
Q  86 ttcttgttgaccaggagtgggccagacatcctcccgatccat 127  Q
    |||||||||| ||| |||||||||||||||||||||| ||||    
T  42704991 ttcttgttgagcagcagtgggccagacatcctcccgacccat 42704950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 9093 - 8873
Alignment:
Q  4 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 103  Q
    ||||||| |||||| ||||||||  |||||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9093 ttctatcatgtatcacatcctcttctcgtcaacactgctcaagagtctgacattgtcatgccgagacctgtctaccaggatattcttgttgaccaggagt 8994  T
Q  104 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 203  Q
    |||||||||||| ||||||||||||||||||||||| || |||| |||  || ||||| |||||||| ||||||||  ||||||||||| ||||||||||    
T  8993 gggccagacatcatcccgatccattgcaggtcattaccagcatgcgaggcagggtggaacatgcgatgcagattccgaaggtggtttcaaatccactctt 8894  T
Q  204 ctttggcattttggagggcct 224  Q
    ||| |||||||||||||||||    
T  8893 cttcggcattttggagggcct 8873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 9387093 - 9387358
Alignment:
Q  11 gtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccag 110  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  9387093 gtgtattccatcctctcatcatcaacccagctccagagcctgacattctcatgtcaagacctgtctaccaggatattcttgttgaccaggagtaggccag 9387192  T
Q  111 acatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggc 210  Q
    ||||||| |||| |||||||||||||| | || ||||||||  |||||||||||||||||  |||||||||||||||||||  ||  |||||||||  ||    
T  9387193 acatccttccgacccattgcaggtcatcagcagcatgagaggcagagtggagcatgcgatggagattccagaggtggtttctaatttactcttcttcagc 9387292  T
Q  211 attttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtct 280  Q
    || || |||||| | | || |    |||||||  ||||||||| |||| |||||||||||||||||||||    
T  9387293 atcttagagggcatccagacc----gattatagcgtgtttgacaatcaacaggttccgaggaggaggtct 9387358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 12947479 - 12947613
Alignment:
Q  89 ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggt 188  Q
    ||||||| |||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||  ||||||||||||| |||   |||| |||||||||     
T  12947479 ttgttgagcaggagtgggtcagacatcctcccgatccattgcatgtcatcaacagcatgaaagtcagagtggagcatgtgatggggatttcagaggtggc 12947578  T
Q  189 ttcatatccactcttctttggcattttggagggcct 224  Q
    |||| || ||||||| ||   |||||||||||||||    
T  12947579 ttcaaat-cactctttttcaacattttggagggcct 12947613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 41799291 - 41799148
Alignment:
Q  159 ggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatca 258  Q
    |||||||||||| ||||||||||| ||||||||  |||||||||||||  |||| || |||||||| ||||||||||    |||  ||||||||| ||||    
T  41799291 ggagcatgcgatgcagattccagatgtggtttctaatccactcttcttgagcatcttagagggcctccggatcgatt----atagcgtgtttgacgatca 41799196  T
Q  259 gcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41799195 gcaggttccgaggaggaggtctaggagtcatagtccgcaagagcagca 41799148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 1326698 - 1326623
Alignment:
Q  86 ttcttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtgga 161  Q
    |||||||||| ||| |||||||||||||||||||||| ||||  ||| |||| | |||||| ||||  ||||||||    
T  1326698 ttcttgttgagcagcagtgggccagacatcctcccgacccatatcagatcatcagcaacatcagagccagagtgga 1326623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 306
Target Start/End: Complemental strand, 24216 - 24070
Alignment:
Q  156 agtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgacca 255  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||  |||| || |||||||| |||| |||||    |||  ||||||||| |    
T  24216 agtggagcatgcgatgcagattccagaggtggtttctaatccactcttcttcagcatcttagagggcctccggaacgatt----atagcgtgtttgacga 24121  T
Q  256 tcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 306  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  24120 tcagcaggttccgaggaggaggtataggagtcatagtccgcaggagcagca 24070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 16830 - 16789
Alignment:
Q  86 ttcttgttgaccaggagtgggccagacatcctcccgatccat 127  Q
    |||||||||| ||| |||||||||||||||||||||| ||||    
T  16830 ttcttgttgagcagcagtgggccagacatcctcccgacccat 16789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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