View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20023_low_1 (Length: 497)
Name: NF20023_low_1
Description: NF20023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20023_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 4441304 - 4441770
Alignment:
| Q |
16 |
gttgtccgacaccaaagtgtatatgacttcaatcttaagtatcagtgctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441304 |
gttgtccgacaccaaagtgtatatgacttcaatcttaagtatcagtcctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttg |
4441403 |
T |
|
| Q |
116 |
tggtggaattcatctagacgtgcaaagcactacaccaataagtttaccattgctgaagatgctgctaattgatgtcctctgtaacatggaagtggctttt |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4441404 |
tggtggaattcatctagacgtgcaaagcactacaccaataagtttaccatcgctgaagatgctgctaattgatgtcctcggtaacgtggaagtggctttt |
4441503 |
T |
|
| Q |
216 |
gtaaatgcactcctctttggctgcccaaacatcgaagctttggaccttaactttttatctgatagcttggagaatgtttgcctcccagcttccttgaaaa |
315 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441504 |
gtaaatgcactcctctatggctgcccaaacatcgaagctttggaccttcactttttatctgatagcttggagaatgtttgcctcccagcttccttgaaaa |
4441603 |
T |
|
| Q |
316 |
ggctgaaaatccaaattgataatgactttgggtcttcgcttgaaataaatgcgccagatcttgagtaccttaacatttaccaacacaaattcatcgatgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441604 |
ggctgaaaatccaaattgataatgactttgggtcttcgcttgaaataaatgcaccagatcttgagtaccttaacatttaccaacacaaattcatcgatgt |
4441703 |
T |
|
| Q |
416 |
tttaagcatgaacagctttcacaatgtggtagaagcaagtcttgatctctttcctttctcgtataat |
482 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441704 |
tttaagcatgaacagctttcacaacgtggtagaagcaagtcttgatctctttcctttctcgtataat |
4441770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 29585470 - 29585432
Alignment:
| Q |
354 |
cttgaaataaatgcgccagatcttgagtaccttaacatt |
392 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| |
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| T |
29585470 |
cttgaaataaatgcgcctgatcttgagtaccttaacatt |
29585432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 4427818 - 4427718
Alignment:
| Q |
291 |
gtttgcctcccagcttccttgaaaaggctgaaaatccaaattgataatgactttgggtcttcgcttgaaataaatgcgccagatcttgagtaccttaaca |
390 |
Q |
| |
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|||||| ||||| |||| ||||||||| ||| |||| ||||||||||| ||||| ||| |||||||| || || || ||||||||||||||| ||| |
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| T |
4427818 |
gtttgcgtcccaccttctttgaaaaggttgacaatcatcattgataatgaagttggggcttaccttgaaatgaaagcaccggatcttgagtacctttaca |
4427719 |
T |
|
| Q |
391 |
t |
391 |
Q |
| |
|
| |
|
|
| T |
4427718 |
t |
4427718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 46 - 479
Target Start/End: Complemental strand, 8383383 - 8382948
Alignment:
| Q |
46 |
aatcttaagtatcagtgctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcac |
145 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||||| || ||| ||||||||| |||| |||| || |||||||||| || | |||||| |
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| T |
8383383 |
aatcttatgtatcagtgctaaatagttatgaa-tgtgatataaaataattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaagctt |
8383285 |
T |
|
| Q |
146 |
tacaccaataagtttaccattgctgaagatgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctttggctgcccaaac |
245 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||||| || || || | |||||||| || | || |||||||| || | ||||||||||||| |
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|
| T |
8383284 |
tacgacaataagtttaccatcactgaagatactgctaattgacatcttcggttatgtggaagtgcctatggtgaatgcacttctatgtggctgcccaaac |
8383185 |
T |
|
| Q |
246 |
atcgaagctttggaccttaactttttatctgatagcttggagaatgtttgcctcccagcttccttgaaaaggctgaaaatccaaattga---taatgact |
342 |
Q |
| |
|
||||||| | | || ||||| |||||| | |||||||||| ||||||||||| ||| || ||||||||||||||||||| ||| || ||| || |
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|
| T |
8383184 |
atcgaagttctagatcttaaatttttaaccaatagcttggacaatgtttgccttccacctaccttgaaaaggctgaaaattggaatagagagtaaggagg |
8383085 |
T |
|
| Q |
343 |
ttgggtcttcgcttgaaataaatgcgccagatcttgagtaccttaacatttaccaacacaaattcatcgatgttttaagcatgaacagctttcacaatgt |
442 |
Q |
| |
|
| ||| |||||||||||||||| |||||||||||||||||| | |||||||||||| ||| |||| ||||||||||| |||||| | ||| |||||||| |
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| T |
8383084 |
tcgggccttcgcttgaaataaacgcgccagatcttgagtacataaacatttaccaatacagtttcagcgatgttttaaacatgaaaaacttgcacaatgt |
8382985 |
T |
|
| Q |
443 |
ggtagaagcaagtcttgatctctttcctttctcgtat |
479 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||| |
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|
| T |
8382984 |
tatagaagcaagtctcgatctcatgcctttctcgtat |
8382948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 70 - 479
Target Start/End: Complemental strand, 8367361 - 8366949
Alignment:
| Q |
70 |
gttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccattgct |
169 |
Q |
| |
|
|||||||||| | |||||| || ||||||||||| | ||||||| || ||| |||||||||| || | |||||| |||| ||||||||||||||| || |
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|
| T |
8367361 |
gttatgaaatttcatataatataatttgtttgttacacagtattcgtagtgaaattcatctaaacattcaaagctctacgacaataagtttaccatcact |
8367262 |
T |
|
| Q |
170 |
gaagatgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctttggctgcccaaacatcgaagctttggaccttaacttt |
269 |
Q |
| |
|
|||||| ||||||||||| || || || | || || | || | || |||||||| || | |||||||||||||||||||||| | || ||||| ||| |
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|
| T |
8367261 |
gaagatactgctaattgacatcttcggttatgtgcaaatccctatggtgaatgcacttctatgtggctgcccaaacatcgaagctctagatcttaaattt |
8367162 |
T |
|
| Q |
270 |
ttatctgatagcttggagaatgtttgcctcccagcttccttgaaaaggctgaaaatccaaattgata---atgactttgggtcttcgcttgaaataaatg |
366 |
Q |
| |
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|| | |||||||||| ||||||| ||| ||| || ||||||||||||||||||| |||| || | |||| | || ||| |||||||||||| | |
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| T |
8367161 |
ctaaccaatagcttggacaatgttttccttccacctaccttgaaaaggctgaaaattgaaatagagagtgatgaggtcggtcctttgcttgaaataaacg |
8367062 |
T |
|
| Q |
367 |
cgccagatcttgagtaccttaacatttaccaacacaaattcatcgatgttttaagcatgaacagctttcacaatgtggtagaagcaagtcttgatctctt |
466 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||| ||||| |||||| |||| |||||| | ||| |||||||| ||||||||||||||| || || | |
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|
| T |
8367061 |
cgccagatcttgagtacatcaacatttaccaatacagattcagcgatgtattaaacatgaaaaacttgcacaatgttgtagaagcaagtctttatttcgt |
8366962 |
T |
|
| Q |
467 |
tcctttctcgtat |
479 |
Q |
| |
|
||||| |||||| |
|
|
| T |
8366961 |
gcctttgtcgtat |
8366949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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