View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20024_high_1 (Length: 726)

Name: NF20024_high_1
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20024_high_1
NF20024_high_1
[»] chr2 (46 HSPs)
chr2 (17-712)||(10370977-10371653)
chr2 (336-712)||(10347213-10347580)
chr2 (17-268)||(10334875-10335120)
chr2 (17-284)||(8574235-8574496)
chr2 (17-278)||(10351317-10351562)
chr2 (17-266)||(10346850-10347098)
chr2 (18-283)||(9318702-9318973)
chr2 (18-281)||(9287746-9287994)
chr2 (26-237)||(9326574-9326784)
chr2 (32-233)||(9285010-9285207)
chr2 (27-211)||(11425224-11425408)
chr2 (465-650)||(11987865-11988048)
chr2 (426-712)||(9315554-9315838)
chr2 (336-523)||(10335209-10335397)
chr2 (17-284)||(9291112-9291372)
chr2 (17-145)||(10340598-10340730)
chr2 (374-663)||(9061545-9061828)
chr2 (56-282)||(9061951-9062182)
chr2 (17-285)||(9068813-9069085)
chr2 (21-285)||(9315227-9315485)
chr2 (17-156)||(9271860-9272002)
chr2 (27-154)||(9273217-9273344)
chr2 (478-650)||(12019266-12019434)
chr2 (401-574)||(10352622-10352787)
chr2 (465-571)||(9066089-9066194)
chr2 (514-650)||(12012927-12013061)
chr2 (489-692)||(9364210-9364409)
chr2 (187-285)||(9273899-9273997)
chr2 (449-663)||(9320528-9320736)
chr2 (17-156)||(9076551-9076687)
chr2 (624-712)||(10335586-10335675)
chr2 (223-282)||(10340783-10340842)
chr2 (228-278)||(9295433-9295483)
chr2 (426-528)||(9274099-9274197)
chr2 (426-556)||(9291473-9291598)
chr2 (372-484)||(7116557-7116668)
chr2 (336-445)||(9272148-9272263)
chr2 (97-154)||(7116943-7117000)
chr2 (478-556)||(12006563-12006643)
chr2 (583-663)||(9328275-9328355)
chr2 (465-516)||(10340974-10341025)
chr2 (76-154)||(12007142-12007220)
chr2 (502-574)||(10335412-10335483)
chr2 (382-416)||(9319106-9319140)
chr2 (248-285)||(8580378-8580415)
chr2 (412-484)||(9364107-9364177)
[»] chr4 (2 HSPs)
chr4 (29-271)||(26574122-26574357)
chr4 (509-574)||(26574509-26574573)
[»] chr8 (1 HSPs)
chr8 (43-285)||(41968167-41968408)
[»] chr3 (2 HSPs)
chr3 (336-663)||(37461914-37462236)
chr3 (17-285)||(37461549-37461819)
[»] chr1 (7 HSPs)
chr1 (474-703)||(29453621-29453849)
chr1 (500-707)||(29443634-29443849)
chr1 (474-525)||(29468278-29468329)
chr1 (494-638)||(29422911-29423052)
chr1 (171-271)||(29462100-29462200)
chr1 (95-154)||(29454250-29454309)
chr1 (21-70)||(29462264-29462313)
[»] scaffold0667 (3 HSPs)
scaffold0667 (25-283)||(1713-1967)
scaffold0667 (508-661)||(4057-4208)
scaffold0667 (336-416)||(2053-2132)


Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 17 - 712
Target Start/End: Original strand, 10370977 - 10371653
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10370977 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 10371076  T
Q  117 tctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatagata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| ||||||||||||||||||||||||||     
T  10371077 tctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaa---aaaaaaatgaatctcatcaaagtaacttcaaaaacatcacaaaagaatagatg 10371173  T
Q  217 ataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttctaagctcaactcatggcaggttggaatagtctca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10371174 ataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttctaagctcaactcatggcaagttggaatagtctca 10371273  T
Q  317 acattcagaannnnnnnnn-aggagtgaagatctgaaacaataactgaaaaagaataacaattcataccaaaattctttctttaagcaaattctttagct 415  Q
    ||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10371274 acattcagaattttttttttaggagtgaagatctgaaacaataactgaaaaagaataacaattcataccaaaattctttctttaagcaaattctttagct 10371373  T
Q  416 agtcataagctcaactcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaac 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10371374 agtcataagctcaactcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaac 10371473  T
Q  516 ataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaattgaataagtacctttaacacagagtttaactgcatatataat 615  Q
    ||||||                ||||||||||||||||||||||||||||||||||||| |||  | |||||||||||||||||||||||||||||||||    
T  10371474 ataaac----------------aagtaattagaaaatcctttaccctatgataagaattcaatttg-acctttaacacagagtttaactgcatatataat 10371556  T
Q  616 atgatggatccattgaactgatattaacttatacacaacaaaaactcagttaaaacaataagtaccttctcttgcttgtatgattctccttcttcct 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10371557 atgatggatccattgaactgatattaacttatacacaacaaaaactcagttaaaacaataagtaccttctcttgcttgtatgattctccttcttcct 10371653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 336 - 712
Target Start/End: Original strand, 10347213 - 10347580
Alignment:
Q  336 aggagtgaagatctgaaacaataactgaaaaagaataacaattcataccaaaattctttcttt-aagcaaattctttagctagtcataagctcaactctt 434  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||  |||||||||||||    
T  10347213 aggagtgaaggtctcaaacaataaatgaaaaagaataacaattcataccaaaattctttcttttaagaaaattctttagctagtcccaagctcaactctt 10347312  T
Q  435 aaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagact 534  Q
    ||||||||||| | |||||| ||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  10347313 aaactaacacatagcatacattgttgtcaactttttgtttcttttaaaagcaagcatatagacattgtcaaatacataaacataaac-aaggtaaagact 10347411  T
Q  535 ttaaagtaattagaaaatcctttaccctatgataagaattgaataagtacctttaacacagagtttaactgcatatataatatgatggatccattgaact 634  Q
    | |||||||||||||||| || || ||||||||||||||| |||  |          | ||||||||||||||||||| |||||||   |||||||||||    
T  10347412 tcaaagtaattagaaaatactctatcctatgataagaattcaatttg----------atagagtttaactgcatatatgatatgataagtccattgaact 10347501  T
Q  635 gatattaacttatacacaacaaaaactcagttaa--aacaataagtaccttctcttgcttgtatgattctccttcttcct 712  Q
    |||| |||||||||||||||||||||||||||||  || || ||||||||||||||||||| ||||||||||||||||||    
T  10347502 gata-taacttatacacaacaaaaactcagttaaacaataagaagtaccttctcttgcttggatgattctccttcttcct 10347580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 10334875 - 10335120
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10334875 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 10334974  T
Q  117 tctcaatttaaatcctcgggacaaaaagtcgtccctgtgg-gaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaa---ta 212  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||          |||||||||| ||||||||||||| || ||||||||||||   |     
T  10334975 tctcaatttaaatcctcgggacaagaagtcatccctgtggagaaa--------aatgaatctcataaaagtaagttcaacaatatcacaaaagaatgttc 10335066  T
Q  213 gataataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcat 268  Q
    ||||  |||||||||| ||||||||||||||||| | |||||||||||||||||||    
T  10335067 gata--aaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 10335120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 8574496 - 8574235
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 116  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||    ||||  | ||||||||     
T  8574496 accttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt----cctttaaccccttacaa 8574401  T
Q  117 tctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatagata 216  Q
    |||||||||||||| |  |||||| ||| | ||||||||| |||          ||||||||||| |||||||||||| || ||||||||||||||| |     
T  8574400 tctcaatttaaatctttaggacaagaagccatccctgtggaaaa---aaaaaaatgaatctcatcgaagtaagttcaacaatatcacaaaagaatagttg 8574304  T
Q  217 ataaaaa-ccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttcta 284  Q
    ||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  8574303 ataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttcta 8574235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 10351317 - 10351562
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 116  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| | |||||||| |||||||||||||||||    |  ||||||| |||||||||     
T  10351317 acctttcctacaaaccaaggtgagcaattccatcacaagaaacaacagaagcatcctatttcagctgcacttcac----tggtccttccttcccttacaa 10351412  T
Q  117 tctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatagata 216  Q
    |||||||||||||||||  ||||| ||||||||||||||| |||          ||||||    ||||| ||||||||||| ||||||||||||||| |     
T  10351413 tctcaatttaaatcctccagacaagaagtcgtccctgtggaaaa--------aatgaatc---acaaag-aagttcaaaaatatcacaaaagaatagttg 10351500  T
Q  217 ataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaa 278  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10351501 ataaaaatcatgcttttgaaaggaactatgcataaatttggagtactttcatggtaggccaa 10351562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 10346850 - 10347098
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| || |||||| ||||||||||||     
T  10346850 accttttccacaaaccaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgcacttcacaggtccttcctaccatcccttacaa 10346949  T
Q  117 tctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatag--- 213  Q
    |||||||||||||||||||||||| ||||| |||||||||||||          |  ||||||||| ||||||||||| || || |||||||||| |       
T  10346950 tctcaatttaaatcctcgggacaagaagtcatccctgtgggaaa-------aaattcatctcatcatagtaagttcaacaatatgacaaaagaattgttc 10347042  T
Q  214 ---ataataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttc 266  Q
       | || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  10347043 ataaaaaaaaaaaccatgtttttgaaaggaactatgcataaatttggagtaatttc 10347098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 9318702 - 9318973
Alignment:
Q  18 cctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc---acttcacacgttcttccttccatcccttac 114  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||   || ||||| || ||||||||||||||||||    
T  9318702 cctttcccacaaaccaaggtttctaattccatcacaagaaacaacttgagtatcctgtttcagctgctgcacatcacaggtccttccttccatcccttac 9318801  T
Q  115 agtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaataga 214  Q
    | |||||||||||||||||||||||| |||||||||||||||  |||         ||||||||||||||| |||||||| || ||||||||| |||||     
T  9318802 aatctcaatttaaatcctcgggacaagaagtcgtccctgtgg--aagaaaaaaaaatgaatctcatcaaagcaagttcaacaatatcacaaaataatagt 9318899  T
Q  215 taat-aaaaaccatgc-ttttgaaaggaactatgcataaatttggag---taatttcatggtaggccaatttct 283  Q
    | || ||||||||||| |||| |||||||||| ||||||  || |||   ||||||||||||||||||||||||    
T  9318900 tgataaaaaaccatgctttttaaaaggaactaagcataagcttagagtaataatttcatggtaggccaatttct 9318973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 9287746 - 9287994
Alignment:
Q  18 cctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagt 117  Q
    ||||||| ||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||||||| |    
T  9287746 cctttcccacaagacaaggtgactaactccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaat 9287845  T
Q  118 ctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatagataa 217  Q
    ||||||||||||||||||||||||||||||||| |||||||||          |||||||||||||||| ||||||        |||| ||  | |  |     
T  9287846 ctcaatttaaatcctcgggacaaaaagtcgtccttgtgggaaa---aaaaaattgaatctcatcaaagttagttca--------acaatag--ttggca- 9287931  T
Q  218 taaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaattt 281  Q
     |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9287932 -aaaaactaagcttttgcaaggaactatgcataaatttggagtaatttcatggtaggccaattt 9287994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 9326574 - 9326784
Alignment:
Q  26 acaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc---acttcacacgttcttccttccatcccttacagtctcaa 122  Q
    ||||||||||  |||||||||||||||||||||||||| ||| ||||||| ||||||||   || ||||| || |||||||| ||||||||||  |||||    
T  9326574 acaaaccaagcagactaattccatcacaagaaacaacttgagtatcctgtatcagctgctgcacatcacaggtccttccttctatcccttacaacctcaa 9326673  T
Q  123 tttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatagataataaaa 222  Q
    |||||||||||||||||| ||||||||||||| ||||||         ||||||||||| |||||||||||| || ||||||||||||||| | ||||||    
T  9326674 tttaaatcctcgggacaagaagtcgtccctgt-ggaaag---aaaaactgaatctcatcgaagtaagttcaacaatatcacaaaagaatagttgataaaa 9326769  T
Q  223 accatgcttttgaaa 237  Q
    |||||||||||||||    
T  9326770 accatgcttttgaaa 9326784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 9285207 - 9285010
Alignment:
Q  32 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcc 131  Q
    |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||    
T  9285207 caagatgactaattccatcacaagaaactacttgagcatcatgtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatcc 9285108  T
Q  132 tcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaata---gataataaaaaccatg 228  Q
    || |||||| |||||||||||||| ||||          || ||||||||||||||||||||| || || |||||||||||   ||||| ||||||||||    
T  9285107 tccggacaagaagtcgtccctgtgagaaa-------aaatgcatctcatcaaagtaagttcaacaatattacaaaagaatagttgataaaaaaaaccatg 9285015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 11425408 - 11425224
Alignment:
Q  27 caaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaattta 126  Q
    ||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||| || | ||||||||||||||||| | ||||||||    
T  11425408 caaaccaaggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcacatcacaggtccatccttccatcccttacaatgtcaattta 11425309  T
Q  127 aatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaat 211  Q
    |||||||||||||| ||||||||||||||||||           | ||||||||| |||||||||||| || |||||||||||||    
T  11425308 aatcctcgggacaagaagtcgtccctgtgggaagacaaaaaaaataaatctcatccaagtaagttcaacaaaatcacaaaagaat 11425224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 465 - 650
Target Start/End: Complemental strand, 11988048 - 11987865
Alignment:
Q  465 ttttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctat 564  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||| ||  |||||    
T  11988048 ttttttgtttcttttgaaatcaagcatacagacattgtcaaatatatatacataaacaaaggtagagacttcaaagtaattagaaaatcc-ttgtcctat 11987950  T
Q  565 gataagaattgaataagtacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttataca 650  Q
     ||| ||||| |||  | |||||||||| | ||||||||| ||||||| | ||||||| ||||||||| |||||||||||||||||    
T  11987949 aataggaattcaatttg-acctttaacataaagtttaactacatatatcacatgatgggtccattgaattgatattaacttataca 11987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 426 - 712
Target Start/End: Original strand, 9315554 - 9315838
Alignment:
Q  426 tcaactcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaag 525  Q
    ||||||| |||||||||||| ||||| || |||||||||||||||||| ||||||||||| |||| | ||||| |||||    |||| | ||||||||||    
T  9315554 tcaactcctaaactaacacatatcatgcattgttgtcaattttttgtt-cttttgaaatccagcacacacacaatgtca----catagagataaacaaag 9315648  T
Q  526 gtaaagactttaaagtaattagaaaatcctttaccctatgataagaattgaataagtacctttaacacagagtttaactgcatatataatatgatggatc 625  Q
    ||| ||| ||||||||||||||  |||||||  || ||| ||||||||| |||  | ||||||| || ||||||||||| | ||||| ||||||||| ||    
T  9315649 gtagagaatttaaagtaattagggaatccttgtcc-tataataagaattcaatttg-acctttagcatagagtttaactacttatatcatatgatgggtc 9315746  T
Q  626 cattgaactgatattaacttatacacaacaaaaactcagttaaaacaataagtaccttc------tcttgcttgtatgattctccttcttcct 712  Q
    ||||||||||| ||||||||||||| | ||||||||||  ||| |  ||||||||||||      ||||||||||||||||||||||||||||    
T  9315747 cattgaactgacattaacttatacatagcaaaaactcaaataata-tataagtaccttctcttgttcttgcttgtatgattctccttcttcct 9315838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 336 - 523
Target Start/End: Original strand, 10335209 - 10335397
Alignment:
Q  336 aggagtgaagatctgaaacaataactgaaaaagaataacaattcataccaaaattctttcttta---agcaaattctttagctagtcataagctcaactc 432  Q
    |||||||||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||   ||||||||||| ||||||||| ||| |||||||    
T  10335209 aggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccacaattctttctataagcagcaaattcttaagctagtcacaaggtcaactc 10335308  T
Q  433 ttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaa 523  Q
    | ||||||||||| | |||||| |||||||  |||||||||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||    
T  10335309 taaaactaacacatagcatacattgttgtc-tttttttgtttctttggaaatc-ggcatagacacattgtcaaatacatatacataaacaa 10335397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 9291112 - 9291372
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactg--gagcatcctgtttcagctgcacttcacacgttcttccttccatcccttac 114  Q
    ||||| || |||||||||||| |||||||||||||||| ||||||||   ||| |||||||||||||||||| ||||| |  ||| ||||||||||||||    
T  9291112 accttccccacaaaccaaggtaactaattccatcacaacaaacaacttttgagaatcctgtttcagctgcacatcacaggcccttacttccatcccttac 9291211  T
Q  115 agtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaataga 214  Q
    | |||||||||||||||||||||||| ||||| ||||||||| |||           ||||||||||    ||||||||| || ||| |||||||||||     
T  9291212 aatctcaatttaaatcctcgggacaagaagtcctccctgtggaaaa-----aaaaaagaatctcatc----taagttcaacaatatcgcaaaagaatagt 9291302  T
Q  215 taat-aaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttcta 284  Q
    | || |||||||||||||||||| | ||||||||||||||||| |||||| | |||| |||||||||||||    
T  9291303 tgataaaaaaccatgcttttgaatgtaactatgcataaatttgaagtaatat-atggcaggccaatttcta 9291372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 10340598 - 10340730
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacac----gttcttccttccatccctt 112  Q
    |||||| | ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    || ||||||||||||||||    
T  10340598 acctttaccacataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcactcacaggtccttccttccatccctt 10340697  T
Q  113 acagtctcaatttaaatcctcgggacaaaaagt 145  Q
    |||||||||||||||||||||||||||||||||    
T  10340698 acagtctcaatttaaatcctcgggacaaaaagt 10340730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 374 - 663
Target Start/End: Complemental strand, 9061828 - 9061545
Alignment:
Q  374 caattcataccaaaattctttctttaagcaaattctttagctagtcataagctcaactcttaaactaacacacatcatacactgttgtcaattttttgtt 473  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||||| |||||||| ||| | |||||| |||| | |||||||||||    
T  9061828 caattcataccaaaattcgttctttaagtaaattctttatctagtcacaaggtcaactcctaaactaaaacatagcatacaatgttattaattttttgtt 9061729  T
Q  474 tcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatc----ctttaccctatgataa 569  Q
    |||||||||||| |||||| ||||||||||    ||||| ||||||||||||||| |   || |||||||||||| ||||    | ||  ||||| | ||    
T  9061728 tcttttgaaatccagcatacacacattgtc----acatatacataaacaaaggtaga---ttcaaagtaattagagaatcaaatccttgtcctataacaa 9061636  T
Q  570 gaattgaataagtacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactca 663  Q
    ||||| |||    ||||||| || ||||||||||| ||||||| |||||||||  |||||||||||| || |||||||||| | ||||||||||    
T  9061635 gaattcaat-ttaacctttagcatagagtttaactacatatattatatgatgg--ccattgaactgacatcaacttatacatagcaaaaactca 9061545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 56 - 282
Target Start/End: Complemental strand, 9062182 - 9061951
Alignment:
Q  56 aaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcc----cttacagtctcaatttaaatcctcgggacaaaaagtcgtccc 151  Q
    |||||||| ||||||| |||||||||||||| ||| | || |||||||||||||    |||||| | ||| |||||||||||||||||| ||||||||||    
T  9062182 aaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccc 9062083  T
Q  152 tgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacat-----cacaaaagaatagataataaaaacc-atgcttttgaaaggaactat 245  Q
    |||| ||||          |||||||||||||||||||||||| || ||     ||||||||||||| | ||||||||| ||||||||||| | ||||||    
T  9062082 tgtgagaaa-----aaaaatgaatctcatcaaagtaagttcaacaatattatatcacaaaagaatagttgataaaaacccatgcttttgaatgaaactat 9061988  T
Q  246 gcataaatttggagtaatttcatggtaggccaatttc 282  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9061987 gcataaatttggagtaatttcatggtaggctaatttc 9061951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 9069085 - 9068813
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctg-cacttcacacgttcttccttccatcccttaca 115  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||| || ||| ||||| ||    ||||||||||||||||    
T  9069085 acctttcccacaaaccaaggtgactaattacatcacaagaagcaacttgagcatcatgtttcagttggcacatcacaggt----ccttccatcccttaca 9068990  T
Q  116 gtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg-------gaaagnnnnnnnnn-tgaatctcatcaaagtaagttcaaaaacatcacaaaa 207  Q
     ||||||||||||||||  |||||| ||  | |||||||||       |||||          ||||||||||| |||||||||||| ||  ||||||||    
T  9068989 atctcaatttaaatcctttggacaagaaaccatccctgtggaaagaaagaaagaaaaaaaaaatgaatctcatcgaagtaagttcaacaatttcacaaaa 9068890  T
Q  208 gaatagataataaaaa-ccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttctaa 285  Q
    |||||| | ||||||| |||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  9068889 gaatagttgataaaaagccatacttttgaaaggaattatgcata--tttggagtaatttcatggtaggccaatttctaa 9068813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 9315227 - 9315485
Alignment:
Q  21 ttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc---acttcacacgttcttccttccatcccttacagt 117  Q
    |||| ||||||||||  |||||||||||||||||||||||| | ||||||| ||||||||||||   || ||||| ||    || ||||||||||||| |    
T  9315227 ttcccacaaaccaagcagactaattccatcacaagaaacaagttgagcatcatgtttcagctgctacacatcacaggt----ccctccatcccttacaat 9315322  T
Q  118 ctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaata---ga 214  Q
    ||||||||||||||||||||||| ||||||||||||| |||||          |||||||||||    |||||| || || ||||||||||||||   ||    
T  9315323 ctcaatttaaatcctcgggacaagaagtcgtccctgttggaaa---aaaaaaatgaatctcatc----taagttaaacaatatcacaaaagaataattga 9315415  T
Q  215 taataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttctaa 285  Q
    ||| |||||||||||||||||| ||||||||| ||||||||| |||||| | || ||||||||||||||||    
T  9315416 taaaaaaaaccatgcttttgaatggaactatgaataaatttgtagtaatat-atagtaggccaatttctaa 9315485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 9271860 - 9272002
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaac---tggagcatcctgtttcagctgcacttcacacgttcttccttccatccctta 113  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||   | ||  |||||||||||||||||| ||||| || |||| ||||||||||||    
T  9271860 acctttcccacaaaccaaggagactaattccattacaagaaacaacaacttgattatcctgtttcagctgcacatcacatgtccttctttccatccctta 9271959  T
Q  114 cagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 156  Q
    || |||||||||||||||||||||||| |||||| ||||||||    
T  9271960 caatctcaatttaaatcctcgggacaagaagtcgaccctgtgg 9272002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 9273217 - 9273344
Alignment:
Q  27 caaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaattta 126  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||| ||||  |||||||  ||||| || ||||||||||||||| ||| ||||||||||    
T  9273217 caaaccaaggagactaattccataacaagaagcaacttgagcatcgtgttaaagctgcatatcacaggtccttccttccatccctcacaatctcaattta 9273316  T
Q  127 aatcctcgggacaaaaagtcgtccctgt 154  Q
    |||||||||||||| |||||||||||||    
T  9273317 aatcctcgggacaagaagtcgtccctgt 9273344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 478 - 650
Target Start/End: Complemental strand, 12019434 - 12019266
Alignment:
Q  478 ttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaatt-ga 576  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||| ||  ||||| |||||||||  |    
T  12019434 ttgaaatcaagcatacacacattgtcaaatacatatacataaacaaaggtagagacttcaaagtaattagagaatcc-ttgtcctataataagaattcca 12019336  T
Q  577 ataagtacctttaacacagagtttaactgcatatataatatgatggatccattgaact-gatattaacttataca 650  Q
    |||     | |||||| ||||||||||| ||||||| ||||||||| ||||||||| | ||| ||||||||||||    
T  12019335 ata-----cattaacatagagtttaactacatatatcatatgatgggtccattgaattggatgttaacttataca 12019266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 401 - 574
Target Start/End: Original strand, 10352622 - 10352787
Alignment:
Q  401 gcaaattctttagctagtcataagctcaactcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacatt 500  Q
    |||||||||||||| | ||| ||| ||||||| ||||  |||||| | |||||| |||||||  |||||||||||||||||||| ||||||| |||||||    
T  10352622 gcaaattctttagcaactcacaaggtcaactcctaaaacaacacatagcatacattgttgtct-ttttttgtttcttttgaaataaagcatacacacatt 10352720  T
Q  501 gtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaatt 574  Q
    ||      |||| |||||||||||||||||||| | |||||||||||| ||||| ||| |||||||||||||||    
T  10352721 gt------catatacataaacaaaggtaaagacgtcaaagtaattagagaatcc-ttatcctatgataagaatt 10352787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 571
Target Start/End: Complemental strand, 9066194 - 9066089
Alignment:
Q  465 ttttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctat 564  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||| | |||| |||||||||||| ||| ||||| |||||    
T  9066194 tttttagtttcttttggaatcaagcatacacacattgtcaaatacatgtacataaacaaaggtagaaacttcaaagtaattagagaat-ctttatcctat 9066096  T
Q  565 gataaga 571  Q
    |||||||    
T  9066095 gataaga 9066089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 514 - 650
Target Start/End: Complemental strand, 12013061 - 12012927
Alignment:
Q  514 acataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaattgaataagtacctttaacacagagtttaactgcatatata 613  Q
    ||||||||||||||| |||||| |||||||||||| |||||||  || ||| ||||||||| |||  | ||||||||||  |||| ||||| |||||||     
T  12013061 acataaacaaaggtagagacttcaaagtaattagagaatccttgtcc-tataataagaattcaatttg-acctttaacatggagtctaactacatatatc 12012964  T
Q  614 atatgatggatccattgaactgatattaacttataca 650  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  12012963 atatgatgggtccattgaattgatattaacttataca 12012927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 489 - 692
Target Start/End: Original strand, 9364210 - 9364409
Alignment:
Q  489 catatacacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaattgaataagtaccttt 588  Q
    |||| ||||||  ||| ||||||| ||||||||||||||| |||||| |||||||||||| | |||||  || ||| |||||||||  ||  | ||||||    
T  9364210 catacacacatgctcagatacatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcc-tataataagaattccatttg-accttt 9364307  T
Q  589 aacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactcagttaaaacaataagtaccttctctt 688  Q
    || | ||||||||| | ||||||| ||||||||| | |||||||| ||||| | |||||||||| |||| |||||| |||| ||| ||||||||||||||    
T  9364308 aatatagagtttaagtacatatatcatatgatgggttcattgaacggatat-agcttatacacagcaaagactcagataaa-caacaagtaccttctctt 9364405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 9273899 - 9273997
Alignment:
Q  187 aagttcaaaaacatcacaaaagaatagataataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttctaa 285  Q
    |||||||| || ||||||||| ||||| | ||||||| ||||||||||||||||||||||| |||||||  | ||||||||| ||||||||||||||||    
T  9273899 aagttcaacaatatcacaaaaaaatagttgataaaaaacatgcttttgaaaggaactatgcttaaatttaaaataatttcattgtaggccaatttctaa 9273997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 449 - 663
Target Start/End: Original strand, 9320528 - 9320736
Alignment:
Q  449 catacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattaga 548  Q
    |||||| || |||| |||||||||||||||||||||| |||||| ||||||||||    ||||| || |||||||||||| |||||| ||||||||||||    
T  9320528 catacattgctgtccattttttgtttcttttgaaatccagcatacacacattgtc----acatatacgtaaacaaaggtagagacttcaaagtaattaga 9320623  T
Q  549 aaatcctttaccctatgataagaattgaataagtacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttata 648  Q
      |||| ||  || || |||| |||| |||  | |||| || || |||||||||||  |||||| ||||||||| ||||||||| ||| || |||| |||    
T  9320624 gtatcc-ttgtccgataataaaaattcaatttg-acctatagcatagagtttaacttaatatatcatatgatgggtccattgaattgacatcaactaata 9320721  T
Q  649 cacaacaaaaactca 663  Q
    || | ||||||||||    
T  9320722 catagcaaaaactca 9320736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 9076687 - 9076551
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcc-tgtttcagctg-cacttcacacgttcttccttccatcccttac 114  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||  ||||||| | ||||||||| ||| ||||| |    ||||||||||||||||    
T  9076687 acctttcctgcaaaccaaggtgactaattacatca-aagaaacaactctagcatccatctttcagctgacacatcacagg----tccttccatcccttac 9076593  T
Q  115 agtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 156  Q
    | ||||||||||||||||  |||||| ||| | |||||||||    
T  9076592 aatctcaatttaaatcctttggacaagaagccatccctgtgg 9076551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 624 - 712
Target Start/End: Original strand, 10335586 - 10335675
Alignment:
Q  624 tccattgaactgatattaacttatacacaacaaaaactcagttaa--aacaataagtaccttctcttgcttgtatgattctccttcttcct 712  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||  || || |||||||||| |||||||||| |||||| |||||||||    
T  10335586 tccattgaactgatat-aacttatacacaacaaaaactcagtcaaacaataagaagtaccttcccttgcttgtacgattctgcttcttcct 10335675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 10340783 - 10340842
Alignment:
Q  223 accatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttc 282  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  10340783 accatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttc 10340842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 9295483 - 9295433
Alignment:
Q  228 gcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaa 278  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9295483 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 9295433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 426 - 528
Target Start/End: Original strand, 9274099 - 9274197
Alignment:
Q  426 tcaactcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaag 525  Q
    ||||||||||||| |||||| | |||||| |||||||||||||||  |||||| ||||||| ||||| ||||||||||    ||||| ||||||||||||    
T  9274099 tcaactcttaaaccaacacatagcatacattgttgtcaatttttttgttctttagaaatcatgcatacacacattgtc----acatatacataaacaaag 9274194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 426 - 556
Target Start/End: Original strand, 9291473 - 9291598
Alignment:
Q  426 tcaactcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaag 525  Q
    |||||||||||||  | ||| | |||||| ||||||||||||||  || ||||||| ||| |||||| |||||||||||    |||| ||||||||||||    
T  9291473 tcaactcttaaacatatacatagcatacattgttgtcaatttttaatt-cttttgacatccagcatacacacattgtca----catatacataaacaaag 9291567  T
Q  526 gtaaagactttaaagtaattagaaaatcctt 556  Q
    ||| |||||| |||||||||||| |||||||    
T  9291568 gtagagacttcaaagtaattagagaatcctt 9291598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 484
Target Start/End: Complemental strand, 7116668 - 7116557
Alignment:
Q  372 aacaattcataccaaaattctttctttaagcaaattctttagctagtcataagctcaactcttaaactaacacacatcatacactgttgtcaattttttg 471  Q
    |||||||||||||||||| | || ||||| |||||| | ||||||| || ||| ||||||||||| |||||||| | |||||| ||| ||||| || |||    
T  7116668 aacaattcataccaaaatacgttatttaatcaaattatatagctagacacaaggtcaactcttaagctaacacatagcatacattgtggtcaa-ttgttg 7116570  T
Q  472 tttcttttgaaat 484  Q
    |||||||||||||    
T  7116569 tttcttttgaaat 7116557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 9272148 - 9272263
Alignment:
Q  336 aggagtgaagatctgaaacaataactgaaaaagaataa---caattcataccaaaattctttctttaagcaaattctt---tagctagtcataagctcaa 429  Q
    |||||| ||||||| ||||||||| | ||||| || ||   |||||||| ||||||||||||||||||||||||  ||   |||||||||| ||| ||||    
T  9272148 aggagtaaagatctcaaacaataaataaaaaataaaaaatacaattcatgccaaaattctttctttaagcaaatctttagctagctagtcacaaggtcaa 9272247  T
Q  430 ctcttaaactaacaca 445  Q
    ||||||||||| ||||    
T  9272248 ctcttaaactagcaca 9272263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 7117000 - 7116943
Alignment:
Q  97 cttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgt 154  Q
    ||||||||||||||||||| ||||||||||||||||  |||||| ||||| |||||||    
T  7117000 cttccttccatcccttacaatctcaatttaaatcctttggacaagaagtcctccctgt 7116943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 556
Target Start/End: Complemental strand, 12006643 - 12006563
Alignment:
Q  478 ttgaaatcaagcatatacacattgtcaaatac--ataaacataaacaaaggtaaagactttaaagtaattagaaaatcctt 556  Q
    |||||||| |||||| |||||  |||||||||  ||| ||||||||||||||| |||||| |||||||||||| |||||||    
T  12006643 ttgaaatccagcatacacacagagtcaaatacttatatacataaacaaaggtagagacttcaaagtaattagagaatcctt 12006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 663
Target Start/End: Original strand, 9328275 - 9328355
Alignment:
Q  583 acctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactca 663  Q
    ||||||| || ||||||||||| ||||||| |||||| || ||||||||| ||| || |||||||||| | ||||||||||    
T  9328275 acctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 9328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 10340974 - 10341025
Alignment:
Q  465 ttttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaaca 516  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||| |||||    
T  10340974 ttttttgtttcttttgaaataaagcatacacacattgtcatatacacaaaca 10341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 12007220 - 12007142
Alignment:
Q  76 ttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgt 154  Q
    ||||||| ||| | ||| |||||||||||  |||||||||   |||||||||||||||||||||  |||||||||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtcgtccctgt 12007142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 574
Target Start/End: Original strand, 10335412 - 10335483
Alignment:
Q  502 tcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaatt 574  Q
    ||||||||||| |||||||||||||||| ||||  | |||||||||| ||||| | | |||||||||||||||    
T  10335412 tcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcc-tcatcctatgataagaatt 10335483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 9319106 - 9319140
Alignment:
Q  382 accaaaattctttctttaagcaaattctttagcta 416  Q
    ||||||||||||||||| |||||||||||||||||    
T  9319106 accaaaattctttctttcagcaaattctttagcta 9319140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 8580415 - 8580378
Alignment:
Q  248 ataaatttggagtaatttcatggtaggccaatttctaa 285  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  8580415 ataactttggagtaatttcatggtaggcaaatttctaa 8580378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 9364107 - 9364177
Alignment:
Q  412 agctagtcataagctcaactcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaat 484  Q
    ||||||||| ||| |||||||||||||  ||||| | ||||||| ||||||  | ||||||||||||||||||    
T  9364107 agctagtcacaaggtcaactcttaaaccgacacataacatacacagttgtc--tgttttgtttcttttgaaat 9364177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 26574122 - 26574357
Alignment:
Q  29 aaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||    
T  26574122 aaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggtccttccgtccatcgcttacagtctcaatttaaa 26574221  T
Q  129 tcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatagataataaaaaccatg 228  Q
    | ||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||    
T  26574222 ttctctggacaaaaagtcgtccctgtgggaaa-------aaatgaatctcatcaaagtaagttcaaaaatatcacaaaagaatagttgataaaagccatg 26574314  T
Q  229 cttttgaaaggaactatgcataaatttggagtaatttcatggt 271  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||    
T  26574315 ctttttaaaggaactatgcataaaattggagtaagttcatggt 26574357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 574
Target Start/End: Original strand, 26574509 - 26574573
Alignment:
Q  509 cataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaatt 574  Q
    |||| |||||||||| ||||||||| | |||||||||||| ||||| ||| |||||||||||||||    
T  26574509 catatacataaacaacggtaaagacgtcaaagtaattagagaatcc-ttatcctatgataagaatt 26574573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 43 - 285
Target Start/End: Complemental strand, 41968408 - 41968167
Alignment:
Q  43 attccatcacaagaaacaactggagcatcctg-tttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcctcgggacaaa 141  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||| |||||||     
T  41968408 attccatcagaagaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaag 41968309  T
Q  142 aagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatag-----ataataaaaaccatgcttttgaa 236  Q
    ||||| ||||||| | |||          ||||||||||  |||||||||||| || |||||||||||||||     | || ||||||||||||| ||||    
T  41968308 aagtcatccctgtcgaaaa-------aaatgaatctcattgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaaaaaccatgcttctgaa 41968216  T
Q  237 aggaactatgcataaatttggagtaatttcatggtaggccaatttctaa 285  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41968215 aggaactatgcataaattaggagtaatttcatggtaggccaatttctaa 41968167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 336 - 663
Target Start/End: Original strand, 37461914 - 37462236
Alignment:
Q  336 aggagtgaagatctgaaacaataactgaaaaagaataacaattcataccaaaattctttcttt-aagcaaattctttagctagtcataagctcaactctt 434  Q
    |||||||||||||| ||||||| | ||||||| || | |||||||  |||||||||||| ||| |||| ||||||||||||||||| ||| |||| ||||    
T  37461914 aggagtgaagatctcaaacaatgaatgaaaaa-aacagcaattcaagccaaaattcttttttttaagcgaattctttagctagtcacaaggtcaattctt 37462012  T
Q  435 aaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagact 534  Q
    ||||||||||| |  || || ||||||||||||||| |||||||||||||| |||||| ||||||||||    ||||| ||||||||||||||| |||||    
T  37462013 aaactaacacatagaattcattgttgtcaattttttatttcttttgaaatctagcatacacacattgtc----acatatacataaacaaaggtagagact 37462108  T
Q  535 ttaaagtaattagaaaatcctttaccctatgataagaattgaataagtacctttaacacagagtttaactgcatatataatatgatggatccattgaact 634  Q
    | |||||||||||| ||||| ||  ||||| | ||||||| |||  |  | |||| || |||  |||||| ||||||| ||||||||| |||| ||||||    
T  37462109 tcaaagtaattagagaatcc-ttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaact 37462207  T
Q  635 gatattaacttatacacaacaaaaactca 663  Q
     | |  |||||||||| ||||||||||||    
T  37462208 aacagaaacttatacataacaaaaactca 37462236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 37461549 - 37461819
Alignment:
Q  17 acctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacag 116  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| | ||| ||||||||||||| ||||||||     
T  37461549 accttacccacaaaccaaggagactaattccatcacaagaaacaacttgagcaccctgtttcagctgcacattacaggttcttccttccaccccttacaa 37461648  T
Q  117 tctcaatttaaatcctcgggacaaaaagtcgtccctgtg--ggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaataga 214  Q
    ||||||||||||||||| |||||| |||| |||||||||  |||||          ||||||||||  |||||||||||| || |||| |||||||| |     
T  37461649 tctcaatttaaatcctccggacaagaagtggtccctgtgtaggaaa----aacaaatgaatctcatttaagtaagttcaacaatatcaaaaaagaatggt 37461744  T
Q  215 taat--aaaaaccatgcttttgaaaggaactatgc--ataaatttggagtaatttcatggtaggccaatttctaa 285  Q
    | ||  |||||||||| | |||||||| |||||||  ||||||||| |||||| ||||||||||||| |||||||    
T  37461745 tgataaaaaaaccatgttcttgaaaggtactatgcatataaatttgaagtaatatcatggtaggccattttctaa 37461819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 474 - 703
Target Start/End: Complemental strand, 29453849 - 29453621
Alignment:
Q  474 tcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaat 573  Q
    |||| ||||||| |||||| ||||||||||  ||| ||| ||||||||  ||||| |||||| |||||||||||| |||||||   | ||| ||||||||    
T  29453849 tcttatgaaatccagcatacacacattgtcggatagatatacataaacttaggtagagacttcaaagtaattagagaatccttgttc-tataataagaat 29453751  T
Q  574 tgaataagtacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactcagtta--aaac 671  Q
    | |||   ||| ||||||| | ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| | ||||||||||| ||  |||     
T  29453750 tcaatt--tacttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaacttatacagagcaaaaactcagataataaat 29453653  T
Q  672 aataagtaccttctcttgcttgtatgattctc 703  Q
    ||  ||||||||||||||||||||| ||||||    
T  29453652 aaggagtaccttctcttgcttgtataattctc 29453621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 500 - 707
Target Start/End: Complemental strand, 29443849 - 29443634
Alignment:
Q  500 tgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaatt--gaat--aagt--accttt-aaca 592  Q
    ||||||||||| | ||||||||||||||| |||||| ||| |||||||| |||||||  || |||||||||||||  ||||  || |  |||||| ||||    
T  29443849 tgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaatccttgtcc-tatgataagaattcagaattcaatttgaccttttaaca 29443751  T
Q  593 cagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactcagttaa--aacaataagtaccttctcttgc 690  Q
      ||||||||||  |||||| ||||||||| ||||||||| ||||||||||||||||| |  |||||||||| |||  || || ||||||||||||||||    
T  29443750 tggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgc 29443651  T
Q  691 ttgtatgattctccttc 707  Q
    |||| ||||||||||||    
T  29443650 ttgtttgattctccttc 29443634  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 29468329 - 29468278
Alignment:
Q  474 tcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaaag 525  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  29468329 tcttttgaaatccagcatacacacattgtcaaatacatatacataaacaaag 29468278  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 638
Target Start/End: Original strand, 29422911 - 29423052
Alignment:
Q  494 acacattgtcaaatacataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaattgaataagtacctttaacac 593  Q
    ||||| ||||||||||||| ||||||||||||||| |||||| ||| |||||||| ||| | ||  | ||| ||||||||| |||  | |||||| | ||    
T  29422911 acacaatgtcaaatacatatacataaacaaaggtagagacttcaaaataattagagaat-cattgtcatataataagaattcaatttg-acctttta-ac 29423007  T
Q  594 agagtttaactgcatatataatatgatggatccattgaactgata 638  Q
    |||||||||||  |||||| ||||||| | ||||||||| |||||    
T  29423008 agagtttaactagatatatcatatgatcggtccattgaattgata 29423052  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 29462200 - 29462100
Alignment:
Q  171 tgaatctcatcaaagtaagttcaaaaacatcacaaaagaatagataataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatgg 270  Q
    ||||||||||  |||||||||||| || |||| ||||||||||  |  ||||||||   ||||||||| || ||||| |||||||| |||||||||||||    
T  29462200 tgaatctcatgtaagtaagttcaacaatatcataaaagaatagtgataaaaaaccaactttttgaaagtaattatgcttaaatttgaagtaatttcatgg 29462101  T
Q  271 t 271  Q
    |    
T  29462100 t 29462100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 29454309 - 29454250
Alignment:
Q  95 ttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgt 154  Q
    ||||||||||  ||| ||||| | |||||||||||||||||||||| ||||| |||||||    
T  29454309 ttcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatccctgt 29454250  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 29462313 - 29462264
Alignment:
Q  21 ttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcat 70  Q
    |||| ||||| |||||||||||||||||| || |||||||||| ||||||    
T  29462313 ttcccacaaaacaaggtgactaattccattactagaaacaacttgagcat 29462264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 283
Target Start/End: Original strand, 1713 - 1967
Alignment:
Q  25 tacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc---acttcacacgttcttccttccatcccttacagtctca 121  Q
    |||||||||||  |||||||||||| ||||||||||||| ||| || |||||||||||||   || |||||  | |||| ||||| |||||||| |||||    
T  1713 tacaaaccaagcagactaattccattacaagaaacaacttgagaattctgtttcagctgctgcacatcacagatccttcattccaacccttacaatctca 1812  T
Q  122 atttaaatcctcgggacaaaaagtcgtccctgtgggaaagnnnnnnnnntgaatctcatcaaagtaagttcaaaaacatcacaaaagaatag-ataataa 220  Q
    |||||||||||| |||||| ||||||||||||| | |||          ||||||||||| ||||||||||||  | ||||||||  |||||  ||  ||    
T  1813 atttaaatcctccggacaagaagtcgtccctgtagaaaa-------aaatgaatctcatcgaagtaagttcaatgatatcacaaa--aatagtctataaa 1903  T
Q  221 aaaccatgcttttgaaaggaactatgcataa-atttggagtaatttcatggtaggccaatttct 283  Q
    ||||||||||||||||| |||||||||| ||  ||  |||||||||||||||||||||||||||    
T  1904 aaaccatgcttttgaaatgaactatgcaaaagcttaagagtaatttcatggtaggccaatttct 1967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 508 - 661
Target Start/End: Original strand, 4057 - 4208
Alignment:
Q  508 acataaacataaacaaaggtaaagactttaaagtaattagaaaatcctttaccctatgataagaattgaataagtacctttaacacagagtttaactgca 607  Q
    ||||| ||||||||||||||| ||| || |||||||||| | |||||||| || ||| ||||||||| |||  | |  |||| ||||||||||||||  |    
T  4057 acatatacataaacaaaggtagagaattcaaagtaattatagaatccttttcc-tataataagaattcaatttg-agttttagcacagagtttaactaaa 4154  T
Q  608 tatataatatgatggatccattgaactgatattaacttatacacaacaaaaact 661  Q
    || || ||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  4155 taaatcatatgatgggtccattgaacagatattaacttatacacagcaaaaact 4208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 2053 - 2132
Alignment:
Q  336 aggagtgaagatctgaaacaataactgaaaaagaataacaattcataccaaaattctttctttaagcaaattctttagcta 416  Q
    |||||| || |||| ||||||| | ||||||| || | |||||||||||||||||||| |||| |||||||||||||||||    
T  2053 aggagtcaaaatctcaaacaatgaatgaaaaaaaa-agcaattcataccaaaattcttcctttcagcaaattctttagcta 2132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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