View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_high_2 (Length: 701)
Name: NF20024_high_2
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 245 - 685
Target Start/End: Original strand, 41717268 - 41717694
Alignment:
| Q |
245 |
gaagatgtaggctaaattctagcaatattaacaaaagaatatgagttgaagcacatggatatcaaaattcagaactata--tatgtgttgcataaggtgg |
342 |
Q |
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| T |
41717268 |
gaagatgtaggctaaattctagcaatattaacaaaagaatatgagttgaagcacatggatatcaaaattcagaactatatatatgtgttgcataaggtgg |
41717367 |
T |
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| Q |
343 |
atataaagaatacaattacataattttctacttagatgccagaataacaacatcgaaattccacaagttaaaataccgaaaacaatacaattaacggtat |
442 |
Q |
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| T |
41717368 |
atataaagaatacaattacataattttctacttagatgccagaataacaacatcgaaattccacaagttaaaataccgaaaacaatacaattaacggtat |
41717467 |
T |
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| Q |
443 |
tttgacataatcaaagaaatctgcaatctatattgttgttaaaaatatgaagtaataataaacttaccttgcaaaacatttggattttcgcttctattta |
542 |
Q |
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| T |
41717468 |
tttgacataatcagagaaatctgcaatctatattgttgt----------------taataaacttaccttgcaaaacatttggattttcgcttctattta |
41717551 |
T |
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| Q |
543 |
tttggctggggtgtctcttaaacgacctcttctttcgcaatgaaggcttgagaacaaatggagatatctttgattgataactctgacaaaaaatcaaacc |
642 |
Q |
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| T |
41717552 |
tttggctggggtgtctcttaaacgacctcttctttcgcaatgaaggcttgagaacaaatggagatatctttgattgataactctgacaaaaaatcaaacc |
41717651 |
T |
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| Q |
643 |
aactatcacgatcaaataatgagattgaactgcagtatataaa |
685 |
Q |
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| T |
41717652 |
aactatcacgatcaaataatgagattgaactgcagtatttaaa |
41717694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 41717024 - 41717225
Alignment:
| Q |
1 |
acaatctgagttgtgaatttgatcatcttcattttctactcaagtttgaaagcgatataaacaaaaaataggcggtgggtcccaccatcactctttatca |
100 |
Q |
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| T |
41717024 |
acaatctgagttgtgaatttgatcatcttcattttctactcaagtttgaaagtgatataaacaaaaaataggcggtgggtcccaccatcactctttatca |
41717123 |
T |
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| Q |
101 |
ttaaatgttttcaaactcctttggagaggatccaatcccaaaaaatcttctgccatactttacctactacccgaccaagattattagggtccgcttcctt |
200 |
Q |
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| T |
41717124 |
ttaaatgttttcaaactcctttggagaggatccaatcccaaaaaatcttctgccatactttacctactacccgaccaagattattagggtccgcttcctt |
41717223 |
T |
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| Q |
201 |
tg |
202 |
Q |
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|| |
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| T |
41717224 |
tg |
41717225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 644
Target Start/End: Original strand, 28432390 - 28432444
Alignment:
| Q |
590 |
ttgagaacaaatggagatatctttgattgataactctgacaaaaaatcaaaccaa |
644 |
Q |
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| T |
28432390 |
ttgagaacaaatgaagatatatttgattgataattctgacgacaaatcaaaccaa |
28432444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 546
Target Start/End: Original strand, 28432261 - 28432339
Alignment:
| Q |
464 |
tgcaatctatattgttgttaaaaatatgaagtaataataaacttaccttgcaaaacatttggattttcgcttctatttatttg |
546 |
Q |
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| T |
28432261 |
tgcaatctatattattgttaacaatatgaaata----taaacttatcttacaaaacatttggaagttcgtttcaatttatttg |
28432339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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