View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20024_high_7 (Length: 449)
Name: NF20024_high_7
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 6282772 - 6283200
Alignment:
| Q |
18 |
aataaatgtaggcattacaattgaataaaattca-tgtagggactaaacttaaaaatcgtggtattagtggaactaaaagtatatttaaccttagaaaaa |
116 |
Q |
| |
|
|||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6282772 |
aataaatgtaggcaccaaaattgaataaaatttaatgtagggactaaacttaaaaatcgttgtattagtggaactaaaagtatatttaaccttagaaaaa |
6282871 |
T |
|
| Q |
117 |
ataacatattactaaaaaa-----tagtattaagtgataaagttagacaagaaaagagagaaacatttcattagttttataaatttttcattatagagaa |
211 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||| ||||||||| || |||||| |
|
|
| T |
6282872 |
ataacatattaataaaaaaaaaaatagtattaagtgataaagttagataagaaaagaga--aacatttgagtagttttatcaatttttcactagagagaa |
6282969 |
T |
|
| Q |
212 |
attggcaagaaacataga----acttgaatcctcaaatgcatatttatggaaagtgatatacctggataaattggagcatgttgtataacttggggcaaa |
307 |
Q |
| |
|
||||| |||||||||| | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6282970 |
attgggaagaaacatatatacaacatgaatcctcaaatacatatttatggaaagtgatatacctggataaattggagcatgttgtataacttggggcaaa |
6283069 |
T |
|
| Q |
308 |
tcaaaattaatgccctttatagaaggatacttagagattatcatattcaaactttgcccaattcctcctccaacatcaaccaatattgatattccttcaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6283070 |
tcaaaattaatgccctttatagaaggatacttagagattatcatattcaaactttgcccaattcctcctccaacatcaaccaatattgatattccttcaa |
6283169 |
T |
|
| Q |
408 |
atcctttgtatttttctaatatcttcttcat |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6283170 |
atcctttgtatttttctaatatcttcttcat |
6283200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 263 - 441
Target Start/End: Original strand, 6278959 - 6279137
Alignment:
| Q |
263 |
gatatacctggataaattggagcatgttgtataacttggggcaaatcaaaattaatgccctttatagaaggatacttagagattatcatattcaaacttt |
362 |
Q |
| |
|
||||||||||||||| |||||| | || ||| ||| | |||| |||||||||||| |||||||| ||||||| || |||||||||||||||||| ||| |
|
|
| T |
6278959 |
gatatacctggataatctggagcgttttctatcactggtggcagatcaaaattaataccctttatgtaaggatatttggagattatcatattcaaatttt |
6279058 |
T |
|
| Q |
363 |
gcccaattcctcctccaacatcaaccaatattgatattccttcaaatcctttgtatttttctaatatcttcttcatctc |
441 |
Q |
| |
|
| |||| || || || ||||||||||| | |||||| |||||||||| || ||| |||| | ||| || |||||||| |
|
|
| T |
6279059 |
ggccaaaaccaccacccacatcaaccaacaatgatatgtcttcaaatccattatatatttcaagtattttgttcatctc |
6279137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 43365223 - 43365105
Alignment:
| Q |
293 |
ataacttggggcaaatcaaaattaatgccctttatagaaggatacttagagattatcatattcaaacttt-gcccaattcctcctccaacatcaaccaat |
391 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| | || || || || ||||||| |||||| ||| | ||| |||| |||||||||||||||||| |
|
|
| T |
43365223 |
ataacttggggcagatcaaagttaattccctttattaatgggtatttggatattatca-attcaagatttcgtccacttccacctccaacatcaaccaat |
43365125 |
T |
|
| Q |
392 |
attgatattccttcaaatcc |
411 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
43365124 |
gttgatattccctcaaatcc |
43365105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 13406902 - 13406971
Alignment:
| Q |
267 |
tacctggataaattggagcatgttgtataacttggggcaaatcaaaattaatgccctttatagaaggata |
336 |
Q |
| |
|
||||||||| | |||| |||| ||| | |||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
13406902 |
tacctggatgagttggtgcatcttgaaccacttggggtaaatcaaaattaatgccttttattgaaggata |
13406971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 13394051 - 13394091
Alignment:
| Q |
374 |
cctccaacatcaaccaatattgatattccttcaaatccttt |
414 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
13394051 |
cctccaacatcaaccaatgttgagattccttcaaaaccttt |
13394091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 3390171 - 3390287
Alignment:
| Q |
307 |
atcaaaattaatgccctttatagaaggatacttagagattatcatattcaaactttgcccaattcctcctccaacatcaaccaatattgatattccttca |
406 |
Q |
| |
|
||||||||| || ||||||| || ||||| || || || ||||| || | || ||| ||| |||| ||||| |||||||||| | |||||||||||||| |
|
|
| T |
3390171 |
atcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccagtgttgatattccttca |
3390270 |
T |
|
| Q |
407 |
aatcctttgtatttttc |
423 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
3390271 |
tatcctttgtatatttc |
3390287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 3403454 - 3403570
Alignment:
| Q |
307 |
atcaaaattaatgccctttatagaaggatacttagagattatcatattcaaactttgcccaattcctcctccaacatcaaccaatattgatattccttca |
406 |
Q |
| |
|
||||||||| || ||||||| || ||||| || || || ||||| || | || ||| ||| |||| ||||| |||||||||| | |||||||||||||| |
|
|
| T |
3403454 |
atcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccagtgttgatattccttca |
3403553 |
T |
|
| Q |
407 |
aatcctttgtatttttc |
423 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
3403554 |
tatcctttgtatatttc |
3403570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University