View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_11 (Length: 402)
Name: NF20024_low_11
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 6029942 - 6029649
Alignment:
| Q |
19 |
catacgacatattgcacaaatttttgtgacctatatca-ctaggagatggagaatatgcatatagtcttatttcagtatt--cctnnnnnnnnnnnngaa |
115 |
Q |
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| T |
6029942 |
catatgacatattgcacaaatttttgtgacctatatcaactaggagatggagaacatgcatatagtcttatttcagtattaacctaaaaaaaaaaaaaaa |
6029843 |
T |
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| Q |
116 |
----ctaaataaatcttctcctccaatgctatcatctctttgatattcttagcggcaagcttctcctgctctcatcgatccattctgccacgaaacctca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
6029842 |
gaaactaaataaatcttctcctccaatgctatcatctctttgatattcttagcggcaagcttctcctgctcacatcgatccattctgccacaaaacctca |
6029743 |
T |
|
| Q |
212 |
accgaagagaagttgagcctggtcagagtcatgggtaaaggatgtttatgtcctccaagctgtcttcagtttctatgtcctccaaaatgtcttc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
6029742 |
accgaagagaagttgagcctggtcagagtcatgggtaaaggatgtttatgtcctccaagctgtcttcagtttctatatcctccaagatgtcttc |
6029649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 6029696 - 6029578
Alignment:
| Q |
285 |
tatgtcctccaaaatgtcttcagtttctatatcctctaagatgtcttc-agtttcttcccattcgaaagtaaatcgaaatttctcactaggtttgataac |
383 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6029696 |
tatgtcctccaagctgtcttcagtttctatatcctccaagatgtcttctagtttcttcccattcgaaagtaaatcgaaatttctcactaggtttaataac |
6029597 |
T |
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| Q |
384 |
acgcatcttaggttttttc |
402 |
Q |
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| T |
6029596 |
acgcatcttaggttttttc |
6029578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 316 - 402
Target Start/End: Complemental strand, 6029382 - 6029296
Alignment:
| Q |
316 |
tcctctaagatgtcttcagtttcttcccattcgaaagtaaatcgaaatttctcactaggtttgataacacgcatcttaggttttttc |
402 |
Q |
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||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6029382 |
tcctccaagatgtcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcatcttaggttttttc |
6029296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 6034625 - 6034503
Alignment:
| Q |
144 |
catctctttgatattcttagcggcaagcttctcctgctctcatcgatccattctgccacgaaa-cctcaaccgaagagaagttgagcctggtcagagtca |
242 |
Q |
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||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| || |||||| ||||| || | |
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| T |
6034625 |
catctctttgaaattcttagcggcaagcttctcctgctcacaacgatccattctgccacgaaaccctcgaccaaagagacgtcgagcctcgtcagggtta |
6034526 |
T |
|
| Q |
243 |
tgggtaaaggatgtttatgtcctc |
266 |
Q |
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| T |
6034525 |
t-ggtaaaggatgtttaggtcctc |
6034503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 6029505 - 6029431
Alignment:
| Q |
328 |
tcttcagtttcttcccattcgaaagtaaatcgaaatttctcactaggtttgataacacgcatcttaggttttttc |
402 |
Q |
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|||||||| | |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6029505 |
tcttcagtgttttcccattcgaacataaattgaaatttctcactagggttgataacacgcatcttaggttttttc |
6029431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 6034496 - 6034421
Alignment:
| Q |
327 |
gtcttcagtttcttcccattcgaaagtaaatcgaaatttctcactaggtttgataacacgcatcttaggttttttc |
402 |
Q |
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||||||||| | |||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
6034496 |
gtcttcagtgttttcccaatcgaacgtaaatcgaaatttctcgctaggtttagtaacacgcatcttaggttttttc |
6034421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 56167272 - 56167217
Alignment:
| Q |
328 |
tcttcagtttcttcccattcgaaagtaaatcgaaatttctcactaggtttgataac |
383 |
Q |
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|||||||| | |||||| || |||| |||||||||||||||||||||||| ||||| |
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| T |
56167272 |
tcttcagtattttcccaatcaaaagaaaatcgaaatttctcactaggtttaataac |
56167217 |
T |
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