View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20024_low_12 (Length: 363)

Name: NF20024_low_12
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20024_low_12
NF20024_low_12
[»] chr2 (5 HSPs)
chr2 (167-346)||(34608922-34609092)
chr2 (6-168)||(34608714-34608876)
chr2 (75-129)||(25770411-25770465)
chr2 (75-129)||(25780906-25780960)
chr2 (75-128)||(41101147-41101200)
[»] chr1 (1 HSPs)
chr1 (66-128)||(5270141-5270203)
[»] chr6 (2 HSPs)
chr6 (75-128)||(24359197-24359250)
chr6 (75-129)||(2038317-2038371)
[»] chr7 (4 HSPs)
chr7 (56-128)||(1295565-1295637)
chr7 (66-114)||(16984337-16984385)
chr7 (75-110)||(37333601-37333636)
chr7 (81-127)||(28065608-28065654)
[»] chr4 (7 HSPs)
chr4 (56-129)||(14043947-14044020)
chr4 (75-128)||(17115921-17115974)
chr4 (66-128)||(49159063-49159125)
chr4 (75-128)||(542286-542338)
chr4 (83-120)||(23125491-23125528)
chr4 (56-128)||(4787072-4787144)
chr4 (75-127)||(18862402-18862454)
[»] chr5 (3 HSPs)
chr5 (80-128)||(19747406-19747454)
chr5 (80-129)||(40294644-40294693)
chr5 (75-128)||(22858539-22858592)
[»] chr3 (1 HSPs)
chr3 (81-129)||(44894196-44894244)
[»] chr8 (2 HSPs)
chr8 (75-121)||(32158712-32158758)
chr8 (75-128)||(15892036-15892089)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 34608922 - 34609092
Alignment:
Q  167 cacttaaaaccctagattatgtttctttctttgttagggcaaatagaaaacaacaacaatggttcagcatagcattggagaaacaccaccaaacgatttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34608922 cacttaaaaccctagattatgtttctttctttgttagggcaaatagaaaacaacaacaatggttcagcatagcattggagaaacaccaccaaacgatttc 34609021  T
Q  267 gccatggatactgaatcaacacaagaacaacaagaagcttcaacggagacaaagaaaaactcgttaacccaacaactacc 346  Q
    ||||||||||||||||||||         ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34609022 gccatggatactgaatcaac---------acaagaagcttcaacggtgacaaagaaaaactcgttaacccaacaactacc 34609092  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 34608714 - 34608876
Alignment:
Q  6 agtgagatgaagggggttgtgtacctgcaaatgcttcaacgtccaagtaattaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaat 105  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||  ||| ||||||||    
T  34608714 agtgagacgaaggggattgtatacctgcaaatgcttcaacgtccaagtaattaactcgcacagggatatttttggaatttcagttgggaataagcaaaat 34608813  T
Q  106 gtgttgggtaaagagcaaaattcacatttaatggtcaattttgtccccttgggcccataagca 168  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  34608814 gtgttgggtaaagagcaaaattcatatttaatggtcaattttgtccccttgggcccatgagca 34608876  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 25770411 - 25770465
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 129  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25770411 ttttagaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcagaattca 25770465  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 25780906 - 25780960
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 129  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  25780906 ttttgaaatttcagttggaaatgagcaaaatgtgttgggtaaatagcacaattca 25780960  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 41101200 - 41101147
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||| |||| |||||    
T  41101200 ttttagaatttcaattggaaacgagcaaaatgtgttgggtaaatagcataattc 41101147  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 5270141 - 5270203
Alignment:
Q  66 cagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    ||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  5270141 caggggtatttttggaatttcagttggaaatgaacaaaatgtgttgggtaaagagcaaaattc 5270203  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 24359197 - 24359250
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  24359197 ttttggaatttcagttgaaaatgagaaaaatgtgttgggtaaagagcagaattc 24359250  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 2038371 - 2038317
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 129  Q
    |||||||||||||||||| ||| || ||||| |||| ||||||||||| ||||||    
T  2038371 ttttggaatttcagttgagaattagtaaaatatgtttggtaaagagcagaattca 2038317  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 1295565 - 1295637
Alignment:
Q  56 ttaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    ||||||| ||||||| || ||||| ||||||||||   ||||||||||||||||||||||||||||| |||||    
T  1295565 ttaactcatgcaggggtatttttgaaatttcagttaggaatgagcaaaatgtgttgggtaaagagcagaattc 1295637  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 16984385 - 16984337
Alignment:
Q  66 cagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggt 114  Q
    |||||||| ||||||||||| |||||  |||||||||||||||||||||    
T  16984385 cagggataattttggaattttagttgggaatgagcaaaatgtgttgggt 16984337  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 37333636 - 37333601
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgtt 110  Q
    |||| |||||||||||||||||||||||||||||||    
T  37333636 tttttgaatttcagttgaaaatgagcaaaatgtgtt 37333601  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 28065654 - 28065608
Alignment:
Q  81 aatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaatt 127  Q
    |||||||||  |||||||| |||||||||||||||||||||| ||||    
T  28065654 aatttcagtaaaaaatgagtaaaatgtgttgggtaaagagcagaatt 28065608  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 14044020 - 14043947
Alignment:
Q  56 ttaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 129  Q
    ||||||| || ||||| | ||| |||||||||||||  ||||||||||||||||| ||||||||||| ||||||    
T  14044020 ttaactcatgtagggacattttaggaatttcagttgggaatgagcaaaatgtgtttggtaaagagcagaattca 14043947  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 17115921 - 17115974
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  17115921 tttttgaatttcagttgagaatgagcaaaatgtgttaggtaaagagcagaattc 17115974  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 49159125 - 49159063
Alignment:
Q  66 cagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    ||||| || ||||||||||| ||||   ||||||||||||||||||||||||||||| |||||    
T  49159125 caggggtatttttggaattttagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 49159063  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 542338 - 542286
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    |||||||||||||||||| || ||||||||| |||||||||| |||||||||||    
T  542338 ttttggaatttcagttgagaa-gagcaaaatatgttgggtaatgagcaaaattc 542286  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 23125491 - 23125528
Alignment:
Q  83 tttcagttgaaaatgagcaaaatgtgttgggtaaagag 120  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  23125491 tttcagttgagaatgagtaaaatgtgttgggtaaagag 23125528  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 4787144 - 4787072
Alignment:
Q  56 ttaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    ||||||| ||||||  || ||||| |||| || |||| |||||||||||| |||| ||||||||||| |||||    
T  4787144 ttaactcatgcaggagtatttttgaaattgcacttgagaatgagcaaaatatgttcggtaaagagcagaattc 4787072  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 18862402 - 18862454
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaatt 127  Q
    ||||| |||||||||||  ||||||||||||||||| ||| ||||||| ||||    
T  18862402 ttttgaaatttcagttgggaatgagcaaaatgtgttaggttaagagcagaatt 18862454  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 19747454 - 19747406
Alignment:
Q  80 gaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    |||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  19747454 gaatttcagttgaaaatgagcaaaatatgtcgggtaaagagcataattc 19747406  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 40294644 - 40294693
Alignment:
Q  80 gaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 129  Q
    |||||||||||||||| || ||||||  ||||||||||||||||||||||    
T  40294644 gaatttcagttgaaaacgaacaaaatcagttgggtaaagagcaaaattca 40294693  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 22858539 - 22858592
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    |||||| ||||||||||  ||||| ||||| ||||||||||||||||| |||||    
T  22858539 ttttgggatttcagttgggaatgaacaaaacgtgttgggtaaagagcataattc 22858592  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 44894196 - 44894244
Alignment:
Q  81 aatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 129  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  44894196 aatttcaattgaaaatgagcaaaatgtgttgtataaagagcaaaattca 44894244  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 32158712 - 32158758
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagc 121  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||    
T  32158712 ttttggaatttcggttggcaatgagcaaaatgtgttgggtaaagagc 32158758  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 15892089 - 15892036
Alignment:
Q  75 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 128  Q
    |||||||||||||||||  |||||||| ||||||||||||||||| || |||||    
T  15892089 ttttggaatttcagttgggaatgagcataatgtgttgggtaaagaacataattc 15892036  T

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