View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_13 (Length: 348)
Name: NF20024_low_13
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 44453257 - 44453592
Alignment:
| Q |
1 |
tagtgagggatttgactgaaaaatctaaaacacttcctccttcaattcctgctcctgtaagtataaatacacccgcagaagcacctaaaccaaatggatc |
100 |
Q |
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| T |
44453257 |
tagtgagggatttgactgaaaaatctaaaacacttcctccttcaattcctgctcctgtaagtataaatacacccgcagaagcacctaaaccaaatggatc |
44453356 |
T |
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| Q |
101 |
agtttctacattgacaacattggccatctcgaagccagcaccttcttcattatctatcgagggattcctagaaaaagctgcagatgaagggttggtgata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44453357 |
agtttctacattgacaacattggccatctcgaagccagcaccttcttcattatctatcgagggattcctagaaaaagctgcagatgaagggttggtgata |
44453456 |
T |
|
| Q |
201 |
attcattctccaacggtaagactctaaaacaaacagtattttacattccattcaataatctactctaaaaccatagagcaggttggcatcttcagaagat |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44453457 |
attcattctccaacggtaagattctaaaacaaacagtattttacattccattcaataatctactctaaaaccatagagcaggttggcatcttcagaagat |
44453556 |
T |
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| Q |
301 |
ctcggacgataaagggaaaacgtgctcctccttcat |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44453557 |
ctcggacgataaagggaaaacgtgctcctccttcat |
44453592 |
T |
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