View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20024_low_14 (Length: 336)

Name: NF20024_low_14
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20024_low_14
NF20024_low_14
[»] chr8 (1 HSPs)
chr8 (12-319)||(14261031-14261338)
[»] chr7 (4 HSPs)
chr7 (13-319)||(10575264-10575570)
chr7 (48-282)||(354316-354551)
chr7 (13-319)||(39954844-39955150)
chr7 (50-282)||(10580701-10580928)
[»] chr3 (7 HSPs)
chr3 (12-302)||(21584613-21584903)
chr3 (12-319)||(24981922-24982229)
chr3 (11-302)||(25084913-25085204)
chr3 (12-302)||(24497275-24497565)
chr3 (12-302)||(24923476-24923766)
chr3 (12-302)||(31825573-31825863)
chr3 (11-302)||(24919902-24920193)
[»] chr2 (2 HSPs)
chr2 (16-306)||(41027452-41027742)
chr2 (220-305)||(30012097-30012182)
[»] chr4 (2 HSPs)
chr4 (16-302)||(22898433-22898719)
chr4 (16-302)||(22950101-22950387)
[»] chr5 (1 HSPs)
chr5 (15-305)||(26358561-26358851)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 14261338 - 14261031
Alignment:
Q  12 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaa 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||     
T  14261338 gaaaatgtcaggtcgtggaaagggaggtaagggattaggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaag 14261239  T
Q  112 ccagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatg 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  14261238 ccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatg 14261139  T
Q  212 tgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261138 tgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgta 14261039  T
Q  312 tggtttcg 319  Q
    ||||||||    
T  14261038 tggtttcg 14261031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 10575264 - 10575570
Alignment:
Q  13 aaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaac 112  Q
    |||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| || || || || |||||||||||||||||||| |    
T  10575264 aaaatgtctggtcgtggaaagggaggtaaaggattaggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagc 10575363  T
Q  113 cagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgt 212  Q
    |||||||||| ||||| |||||||||||||| ||||| ||||| || || ||||| || || |||||  | |||||||||||||| ||||||||||||||    
T  10575364 cagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgt 10575463  T
Q  213 gataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtat 312  Q
     ||||||||||||||||| || ||||| |||||||||||||| || || |||||||||||||||||||| ||| | |||||||||||||| ||  | |||    
T  10575464 tataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctat 10575563  T
Q  313 ggtttcg 319  Q
    |||||||    
T  10575564 ggtttcg 10575570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 282
Target Start/End: Original strand, 354316 - 354551
Alignment:
Q  48 aggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgagaagaggaggagtg 147  Q
    ||||||||||||||||||| ||||| |||| || ||| ||| |||||| |||||||| ||||| |||||||||||  |||| ||||||||||| || |||    
T  354316 aggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 354415  T
Q  148 aagagaattagcgg-gttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgttacgtatactgaacatgcg 246  Q
    ||||| || || ||  || || || || ||||   | || ||||||||||| |||||| |||||| |||  | ||||||||||| || ||||| |||||     
T  354416 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgca 354515  T
Q  247 aggaggaagacggttactgctatggatgttgtttat 282  Q
    |||||||||||  | |||||||||||||||||||||    
T  354516 aggaggaagactctgactgctatggatgttgtttat 354551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 39955150 - 39954844
Alignment:
Q  13 aaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaac 112  Q
    |||||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||  | || || |||||||| ||||||||||| || || || |    
T  39955150 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagc 39955051  T
Q  113 cagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgt 212  Q
    | |||||||| ||  | || ||  | || || ||||||||||| |||||  | || |||||||| |||||||||||  | ||||| ||  | ||||||||    
T  39955050 ctgcgattcgtcgtcttgcaaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgt 39954951  T
Q  213 gataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtat 312  Q
    |||  | ||||||||||| || ||||| ||||| |||||||| || ||||| || ||||||||||| |||||  | ||||| || ||||||||| | ||     
T  39954950 gattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctac 39954851  T
Q  313 ggtttcg 319  Q
    |||||||    
T  39954850 ggtttcg 39954844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 282
Target Start/End: Original strand, 10580701 - 10580928
Alignment:
Q  50 gaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgagaagaggaggagtgaa 149  Q
    ||||||||||||||||| || || |||| || ||| ||| |||||| |||||||| ||||| |||||||||||  |||| ||||||||||  || |||||    
T  10580701 gaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagagttggtgtgaa 10580800  T
Q  150 gagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgttacgtatactgaacatgcgagg 249  Q
    ||| || || || ||||| || || ||||   | ||  |||||||||| |||||| |||||  |||    ||||||||||| || ||||| |||     |    
T  10580801 gaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagcat-----g 10580895  T
Q  250 aggaagacggttactgctatggatgttgtttat 282  Q
    ||||||||  | |||||||||||||||||||||    
T  10580896 aggaagactctgactgctatggatgttgtttat 10580928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 21584903 - 21584613
Alignment:
Q  12 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||| |||||||| || |||||||| ||     
T  21584903 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaag 21584804  T
Q  112 ccagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatg 211  Q
    ||||||||||| ||||| ||||||||||| || || |||||||| || || |||||||| || |||||  | || ||  | ||||| |||||||||||||    
T  21584803 ccagcgattcgtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatg 21584704  T
Q  212 tgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
    ||||  | ||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||    
T  21584703 tgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag 21584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 24981922 - 24982229
Alignment:
Q  12 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaa 111  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||||| || ||||| ||     
T  24981922 gaaaatgtcagggcgtggaaaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaag 24982021  T
Q  112 ccagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatg 211  Q
    || || ||||| ||||| || |||||||| || || |||||||| || || ||||| || ||||||||  | ||||| |||||||| |||||||||||||    
T  24982022 cctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatg 24982121  T
Q  212 tgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgta 311  Q
    | ||  | ||||| ||||| || ||||| || || ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| ||  | ||    
T  24982122 tcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctcta 24982221  T
Q  312 tggtttcg 319  Q
    ||||||||    
T  24982222 tggtttcg 24982229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 25084913 - 25085204
Alignment:
Q  11 cgaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaa 110  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| | || || ||||| ||||||||||| || ||||| ||    
T  25084913 cgaaaatgtcaggtcgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaa 25085012  T
Q  111 accagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaat 210  Q
     || || |||||  |||| ||||||||||| || ||||||||||| || || ||||| || ||||||||  | ||||| |||||||| ||||||||||||    
T  25085013 gcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaat 25085112  T
Q  211 gtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
    |||||  | ||||| ||||| || ||||| || || ||||||||||| || || || ||||||||||| ||||| ||||||||||| |||||    
T  25085113 gtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaag 25085204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 24497565 - 24497275
Alignment:
Q  12 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaa 111  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| | || || ||||| || |||||||| || ||||| ||     
T  24497565 gaaaatgtcagggcgtggaaagggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaag 24497466  T
Q  112 ccagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatg 211  Q
    || || ||||| ||||| || |||||||| || || |||||||| || || ||||| || ||||||||  | ||||| |||||||| |||||||| ||||    
T  24497465 cctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatg 24497366  T
Q  212 tgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
    ||||  | ||||| ||||| || ||||| || || ||||||||||| || || || ||||||||||| ||||| |||||||||||||||||    
T  24497365 tgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaag 24497275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 24923766 - 24923476
Alignment:
Q  12 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaa 111  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| | || || ||||| ||||||||||| || ||||| ||     
T  24923766 gaaaatgtcaggtcgtggtaagggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaag 24923667  T
Q  112 ccagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatg 211  Q
    || || ||||| ||||| || |||||||| || || |||||||| || || ||||| || ||||||||  | ||||| |||||||| |||||||||||||    
T  24923666 cctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatg 24923567  T
Q  212 tgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
    | ||  | |||||||| || || ||||| || || ||||||||||| || || || ||||||||||| ||||| ||||||||||| |||||    
T  24923566 tcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaag 24923476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 31825863 - 31825573
Alignment:
Q  12 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaa 111  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||  | ||||| || ||||| |||||||| || ||||| ||     
T  31825863 gaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaag 31825764  T
Q  112 ccagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatg 211  Q
    || || ||||| ||||| ||||||||||| || |||||||| || || || ||||| || ||||||||| | ||||| |||||||| |||||||||||||    
T  31825763 cctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatg 31825664  T
Q  212 tgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
    | ||  | ||||| || || || ||||| || || ||||||||||| ||||| || ||||||||||| ||||| |||||||| || |||||    
T  31825663 tcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaag 31825573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 24920193 - 24919902
Alignment:
Q  11 cgaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaa 110  Q
    |||||||||| || ||||||||||||||||||||| | |||||||||||||||||||| ||| | ||||| ||||| ||||||||||| || ||||| ||    
T  24920193 cgaaaatgtctggccgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaa 24920094  T
Q  111 accagcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaat 210  Q
     || || ||||| ||||| || |||||||| || ||||||||||| ||||| ||||| || ||||||||  | ||||| |||||||| ||||| ||||||    
T  24920093 gcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaat 24919994  T
Q  211 gtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
    || ||  | |||||||| || || ||||| || || ||||||||||| || || || |||||||| || ||||| |||||||| || |||||    
T  24919993 gtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaag 24919902  T

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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 41027452 - 41027742
Alignment:
Q  16 atgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccag 115  Q
    ||||| || |||||||| || || |||||| | ||||||||||| |||||  |||| || || || ||||| |||||||| |||||||| || || || |    
T  41027452 atgtctggacgtggaaaaggtggaaagggattgggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctg 41027551  T
Q  116 cgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgat 215  Q
    ||||||| || || ||  | ||||||||||||||| | || ||||| ||||| |||||||| || || || ||||||||||| || ||||||||||| ||    
T  41027552 cgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttat 41027651  T
Q  216 aagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact 306  Q
      | ||||||||||| || || || || || ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  41027652 tcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaaggact 41027742  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 30012097 - 30012182
Alignment:
Q  220 gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggac 305  Q
    ||||||||||| || |||||||| ||  |  | ||||| || |||||||||||||| ||||||||| | ||||| |||||||||||    
T  30012097 gatgctgttacttacactgaacacgctcgtcgcaagacagtgactgctatggatgtggtttatgcgctcaagaggcaaggaaggac 30012182  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 22898433 - 22898719
Alignment:
Q  16 atgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccag 115  Q
    ||||| || |||||||| || || |||||  | |||||||| || |||||| ||||||| || || ||||| || |||||||| ||||| ||||| ||||    
T  22898433 atgtctgggcgtggaaaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccag 22898532  T
Q  116 cgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgat 215  Q
    ||||||| ||  | ||  | ||||||||||||||| | || || || |||||||| || || || || || |||||||||||||| ||||||||||||||    
T  22898533 cgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgat 22898632  T
Q  216 aagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
     ||||||||||| || || ||||| || || || |||||||||||||||||||||||||| ||||||||  | |||||||| |||||    
T  22898633 tagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22898719  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 22950101 - 22950387
Alignment:
Q  16 atgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccag 115  Q
    ||||| || |||||||| || || |||||  | |||||||| || |||||| ||||||| || || ||||| || |||||||| ||||| ||||| ||||    
T  22950101 atgtctgggcgtggaaaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccag 22950200  T
Q  116 cgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgat 215  Q
    ||||||| ||  | ||  | ||||||||||||||| | || || || |||||||| || || || || || |||||||||||||| ||||||||||||||    
T  22950201 cgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgat 22950300  T
Q  216 aagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 302  Q
     ||||||||||| || || ||||| || || || |||||||||||||||||||||||||| ||||||||  | |||||||| |||||    
T  22950301 tagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22950387  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 26358851 - 26358561
Alignment:
Q  15 aatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaacca 114  Q
    |||||||||  | ||||| ||||| |||||  |||||||||| ||||||||| | ||||||||||| ||||| |||||||| || ||||| || |||||     
T  26358851 aatgtcaggaagaggaaaaggaggaaagggtttaggaaagggtggtgcaaagcgtcatcgcaaagttcttcgagataacattcagggaattaccaaaccc 26358752  T
Q  115 gcgattcggcgattagcgagaagaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtga 214  Q
    |||||||| ||  | || ||  | || || || ||  | || || ||  |||| || ||||||||||| |||||  | ||||||||  | |||||||| |    
T  26358751 gcgattcgtcgtcttgcaaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgtta 26358652  T
Q  215 taagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggac 305  Q
    |  | |||||||| || || |||||||||||  |  | || || ||||||||||||||||||||||||||| | ||||| |||||||||||    
T  26358651 ttcgtgatgctgtcacttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaaggac 26358561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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