View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_15 (Length: 328)
Name: NF20024_low_15
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 1542120 - 1542417
Alignment:
| Q |
15 |
taattatgtagtttgaaccaatgacactataacagttacatcatcaagcttgccacctgcataacccacatagcccaaagcttgagctgcatcaccaaag |
114 |
Q |
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| T |
1542120 |
taattatgtagtttgaaccaatgacactataacagttacatcatcaagcttgccacctgcataacccacatagcccaaagcttgagctgcatcaccaaag |
1542219 |
T |
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| Q |
115 |
ggacttctagtggatcttgatcttccaacctcttgtgccgtcgtcgccaatatttctgctatttcctgcaagttatacgtatatgttagcataagctacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1542220 |
ggacttctagtggatcttgatcttccaacctcttgtgccgtcgtcgccaatatttctgctatttcctgcaagttatacgtatatgttagcataagctacc |
1542319 |
T |
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| Q |
215 |
aggtgttttaagcacatggtaaacttgatattgaccacgattttgccaagctaacaagttagcaataggttgtgtttgctctcactttcatatatgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1542320 |
aggtgttttaagcacatggtaaacttgatattgaccacgattttgccaagctaacaagttagcaataggttgtgtttgctctcactttcatatatgat |
1542417 |
T |
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