View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_17 (Length: 324)
Name: NF20024_low_17
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 71 - 298
Target Start/End: Original strand, 26613417 - 26613644
Alignment:
| Q |
71 |
tagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccacttagtatcatatgctatgatttaatatatatgcatatttgtggtgtgaca |
170 |
Q |
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||||| ||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
26613417 |
tagtatgtctacaggctgtcattgttttctcctcataaatgaatccccacttagtatcatatgcaatgatttaatatatatgcatatttgtggtttgaca |
26613516 |
T |
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| Q |
171 |
cataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactttagcatccttctctcatccatccctataaattgcaa |
270 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26613517 |
cataaatcaatcaatctcaaccgtctatgttaaatctctagaacaaactaatgacaccaaactttagcatccttctctcatccatccctataaattgcaa |
26613616 |
T |
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| Q |
271 |
ccttccatgccatgcaaatatcagtggt |
298 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
26613617 |
ccttccatgccatgcaaaaatcagtggt |
26613644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 144 - 298
Target Start/End: Original strand, 26628465 - 26628619
Alignment:
| Q |
144 |
atatatatgcatatttgtggtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactttagcatcct |
243 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26628465 |
atatatatatatatgtgtggtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactaatgacaccaaactttagcatcct |
26628564 |
T |
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| Q |
244 |
tctctcatccatccctataaattgcaaccttccatgccatgcaaatatcagtggt |
298 |
Q |
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| T |
26628565 |
tctctcatccatccctataaattgcaaccttccatgccatgcaaaaatcagtggt |
26628619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 144 - 298
Target Start/End: Original strand, 26636956 - 26637110
Alignment:
| Q |
144 |
atatatatgcatatttgtggtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactttagcatcct |
243 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26636956 |
atatatatatatatttgtagtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactaatgacaccaaactttagcatcct |
26637055 |
T |
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| Q |
244 |
tctctcatccatccctataaattgcaaccttccatgccatgcaaatatcagtggt |
298 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
26637056 |
tctctcatccatccctataaatcgcaacctcccatgccatgcaaaaatcagtggt |
26637110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 26635950 - 26636080
Alignment:
| Q |
22 |
ggctcaaccccacaaaaaagaagcctttt-ggctctaaaaatgcacatactagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccac |
120 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26635950 |
ggctccaccccacaaaaaagaagcctttttggctctaaaaatgcacatactagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccac |
26636049 |
T |
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| Q |
121 |
ttagtatcatatgctatgatttaatatatat |
151 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26636050 |
ttagtatcatatgctatgatttaatatatat |
26636080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 26628296 - 26628420
Alignment:
| Q |
28 |
accccacaaaaaagaagccttttgg-ctctaaaaatgcacatactagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccacttagta |
126 |
Q |
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||||||||||||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26628296 |
accccacaaaaaagaagaattttttactctaaatatgcacatactagtaagtctacaggctgtcatcgttttctcctcataaatgcattcccccttagta |
26628395 |
T |
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| Q |
127 |
tcatatgctatgatttaatatatat |
151 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
26628396 |
tcatatgctatgatttaatatatat |
26628420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 26648946 - 26649023
Alignment:
| Q |
90 |
catcgttttctcctcataaatgcattcccacttagtatcatatgctatgatttaatatatatgcatatttgtggtgtgaca |
170 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
26648946 |
catcgttttctccacataaatgcattcccacatagtaccatatgctatgatttaat---tatgcatatttgtggtgtgaca |
26649023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 26649064 - 26649127
Alignment:
| Q |
171 |
cataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactt |
234 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |
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| T |
26649064 |
cataaatcaatcaatctcaaccgtctatgctcaatttccagaacaaactattgccaccaaactt |
26649127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 26716506 - 26716569
Alignment:
| Q |
171 |
cataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |
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| T |
26716506 |
cataaatcaatcaatctcaaccgtctatgctcaatttccagaacaaactattgccaccaaactt |
26716569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 26716388 - 26716465
Alignment:
| Q |
90 |
catcgttttctcctcataaatgcattcccacttagtatcatatgctatgatttaatatatatgcatatttgtggtgtgaca |
170 |
Q |
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||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
26716388 |
catcgttttctccacataaatgcatccccacatagtaccatatgctatgatttaat---tatgcatatttgtggtgtgaca |
26716465 |
T |
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