View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_3 (Length: 636)
Name: NF20024_low_3
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 13 - 614
Target Start/End: Original strand, 8044936 - 8045518
Alignment:
| Q |
13 |
aaaataattagaagcaaaagaaaaaattatgacatgaaattaagaacaagttttagttcttgttgattttggctctaattcactcatgtaattgaatgaa |
112 |
Q |
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| T |
8044936 |
aaaataattagaagcaaaagaaaaaattatgacatgaaattaggaacaagttttagttcttgttgattttggctctaattcactcatgtaattgaatgaa |
8045035 |
T |
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| Q |
113 |
aagttctctttaatttggttgctgctaatacaacttttttagtaagaaaaagaattccaattgtggaatatgactgtgttcacacttcacaatagcaaag |
212 |
Q |
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| T |
8045036 |
a-gttctctttaatttggttgctg---atacaacttttttagtaagaaaaagaattccaattgtggaatatgactgtgttcacacttcacaatagcaaag |
8045131 |
T |
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| Q |
213 |
tgtgagttattggcctaaaatggcatannnnnnnagtagttagcatgtgggttctgattcattgaaatatgcaaagagacaaagtagtattgcttgtcct |
312 |
Q |
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| T |
8045132 |
tgtgagttattggcctaaaatggcatatttttttagtagctagcatgtgggttctgattcattgaaatatgcaaagagacaaagtagtattgcttgtcct |
8045231 |
T |
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| Q |
313 |
tttgattgagaccttgacttgacaggttcacttctttatcataatttttcttattattgtacaaactttctctcctttaattttctctttctcttgcaca |
412 |
Q |
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| T |
8045232 |
tttgattgagaccttgacttgacaggttca---------cataatttttcttattattgtacaaactttctctcctttaat------tttctcttgcaca |
8045316 |
T |
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| Q |
413 |
caagtggaaacttgttgtattccatagcacaccctgaataggtactcgggaccattgaactaacgtgtagttcaataattggttaagaaatttggtttat |
512 |
Q |
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| T |
8045317 |
caagtggaaacttgttgtattccatagcacaccctgaataggtactcgggaccattgaactaacgtgtagttcaataattggttaagaaatttggtttat |
8045416 |
T |
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| Q |
513 |
gttgaaatttaatttaatannnnnnnnnnnnnnnncactaaagttgaattaaagttctcaaaagcatttactctatggtatatatcatcatcaagcaata |
612 |
Q |
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| T |
8045417 |
gttgaaatttaatttaatattttttacatttttttcactaaagttgaattaaagttctcaaaagcatttactctatggtatatatcatcatcaagcaata |
8045516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 12281893 - 12281933
Alignment:
| Q |
33 |
aaaaaattatgacatgaaattaagaacaagttttagttctt |
73 |
Q |
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| T |
12281893 |
aaaaaattatgccatgaaattaggaataagttttagttctt |
12281933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 21528008 - 21528048
Alignment:
| Q |
33 |
aaaaaattatgacatgaaattaagaacaagttttagttctt |
73 |
Q |
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| T |
21528008 |
aaaaaattatgccatgaaattaggaataagttttagttctt |
21528048 |
T |
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