View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_4 (Length: 535)
Name: NF20024_low_4
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 111 - 518
Target Start/End: Original strand, 11886315 - 11886720
Alignment:
| Q |
111 |
gtggggagtgacatttgtactttcatacattcatcaacatctggttgaattgtcgtcccatttgtacttaatccgaaagaagcacttgagataatataaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
11886315 |
gtggggagtgacatttgtactttcatacattcatcaacatctggttgaattgtcccattatttgtacttgatctgaaagaagcacttgagataatataaa |
11886414 |
T |
|
| Q |
211 |
gatttgatagacaaatataacaatacttgagcttcatagcccttttgacacaatactagataatatttatttctgatcccttgcagtaaccttaactaag |
310 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11886415 |
--tttgatagacaaatataactatacttgagcttcatagcccttttgacactatactagataatatttatttctgatcccttgttgtaaccttaactaag |
11886512 |
T |
|
| Q |
311 |
gtgaaacaagggactcttcaaagaagtaaaactactaagaaagcagatattatttgtggaaattgcattctcaaaattcccttctaccttattttagtct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11886513 |
gtgaaacaagggactcttcaaagaagtaaaactactaagaaagcacatattatttgtggaaattgcattctcaaaattcccttctaccttattttagtct |
11886612 |
T |
|
| Q |
411 |
tcagttcaaactgctctccaataagctgtttcaaatttgaaacttccacaataacaaacttagaagacctatcaaattttgtgatcaaaactcttttcct |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11886613 |
tcagttcaaactgctctccaataagctgtttcaaatttgaaacttccacagtaacaaacttagaagacctatcaaattttgtgatcaaaactcttttcct |
11886712 |
T |
|
| Q |
511 |
cattgaat |
518 |
Q |
| |
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|||||||| |
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| T |
11886713 |
cattgaat |
11886720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 263 - 518
Target Start/End: Original strand, 11892290 - 11892544
Alignment:
| Q |
263 |
atactagataatatttatttctgatcccttgcagtaaccttaactaaggtgaaacaagggactcttcaaagaagtaaaactactaagaaagcagatatta |
362 |
Q |
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||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
11892290 |
atactagatgatacttatttctgatcccttgtagcaaccttaactaaggtaaaacaagggactcttcaaagaagtaaaactactaagaaaacacatatta |
11892389 |
T |
|
| Q |
363 |
tttgtggaaattgcattctcaaaattcccttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttccacaat |
462 |
Q |
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||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11892390 |
tttttggaaattgcattctcaaatttcc-ttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttccacagt |
11892488 |
T |
|
| Q |
463 |
aacaaacttagaagacctatcaaattttgtgatcaaaactcttttcctcattgaat |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11892489 |
aacaaacttagaagacctatcaaattttgtgatcaaaactcttttcctcgttgaat |
11892544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 263 - 518
Target Start/End: Original strand, 11897956 - 11898210
Alignment:
| Q |
263 |
atactagataatatttatttctgatcccttgcagtaaccttaactaaggtgaaacaagggactcttcaaagaagtaaaactactaagaaagcagatatta |
362 |
Q |
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||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
11897956 |
atactagatgatacttatttctgatcccttgtagcaaccttaactaaggtaaaacaagggactcttcaaagaagtaaaactactaagaaaacacatatta |
11898055 |
T |
|
| Q |
363 |
tttgtggaaattgcattctcaaaattcccttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttccacaat |
462 |
Q |
| |
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||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11898056 |
tttttggaaattgcattctcaaatttcc-ttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttccacagt |
11898154 |
T |
|
| Q |
463 |
aacaaacttagaagacctatcaaattttgtgatcaaaactcttttcctcattgaat |
518 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11898155 |
aacaaacttagaagacctatcaaattttgtgatcaaaactcttttcctcgttgaat |
11898210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11886054 - 11886135
Alignment:
| Q |
1 |
tttatgcttgcattcaaacatattgcacttttcgcataggactggaattgaaggtttggcattggtggtgcactgtggcgga |
82 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
11886054 |
tttatgctagcattcaaacatattgcacttttcgcataggatgggaattgaaggtttggcattggtggtgcattgtggcgga |
11886135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 11892252 - 11892294
Alignment:
| Q |
195 |
cttgagataatataaagatttgatagacaaatataacaatact |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
11892252 |
cttgagataatatatagatttgatagacaaatataactatact |
11892294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 11897918 - 11897960
Alignment:
| Q |
195 |
cttgagataatataaagatttgatagacaaatataacaatact |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
11897918 |
cttgagataatatatagatttgatagacaaatataactatact |
11897960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 11892209 - 11892179
Alignment:
| Q |
134 |
catacattcatcaacatctggttgaattgtc |
164 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11892209 |
catacattcatcaacatctggttgaattgtc |
11892179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 11897875 - 11897845
Alignment:
| Q |
134 |
catacattcatcaacatctggttgaattgtc |
164 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11897875 |
catacattcatcaacatctggttgaattgtc |
11897845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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