View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_5 (Length: 508)
Name: NF20024_low_5
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 1542123 - 1541825
Alignment:
| Q |
10 |
attatttctagtttattcatctcattatttctttatatttcacgtgcacatacaaccagtttggtaaacatgatactgaagagatgcgattttttccaat |
109 |
Q |
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| T |
1542123 |
attatttctagtttattcatctcattatttctttatatttcacgtgcacatacaaccagtttggtaaacatgatactgaagagatgcgattttttccaat |
1542024 |
T |
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| Q |
110 |
gaacttaccacctattttgggattattactgtatataatggaatggaatgttatggcaatccactgattgaaaattacaaagtaaataatagaatggaat |
209 |
Q |
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| T |
1542023 |
gaacttcccacctattttgggattattactgtatataatggaatggaatgttatggcaatccactgtttgaaaattaaaaagtaaataatagaatggaat |
1541924 |
T |
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| Q |
210 |
ggaaagtgatgacattcattccaccacaaccattgtttattctcatttctataacgaataacattaatgaatgaaaaagttccaaatgggggcatcaaa |
308 |
Q |
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| T |
1541923 |
ggaaagtgatgacattcattccaccacaaccattgtttattctcatttctataacgaataacattaatgaatgaaaaagttccaaatgggggcatcaaa |
1541825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 330 - 492
Target Start/End: Complemental strand, 1541758 - 1541598
Alignment:
| Q |
330 |
ttggattcagaacctagaagtcatggtcatttgaggtttgctacgtataactgaagtaaaacatatacatagtgatttcttttttcactcctaacatgta |
429 |
Q |
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| T |
1541758 |
ttggattcagaacctagaagtcatggtcatttgaggtttgctacgtataactgaagtaaaacatatacatagtgatttcttttttcaatcctaacatgta |
1541659 |
T |
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| Q |
430 |
tccaaattaaaagacaattttttccatgcagaagtatgattctgaacacatatgtatagtttc |
492 |
Q |
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| T |
1541658 |
tccaaattaaaagacaattttttacgtgcagaagtatgattctgaacac--atgtatagtttc |
1541598 |
T |
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