View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_6 (Length: 489)
Name: NF20024_low_6
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 37771965 - 37772139
Alignment:
| Q |
1 |
aaactataatacataaacataatatttatatctataatcatcaagcataaagttgatcccaaatgtttgtgaccctcatttaaatgatttttaataagtg |
100 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37771965 |
aaactataattcataaacataaaatttatatctataatcatcaagcataaagttgatcccaaatgtttgtgaccctcatttaaatggtttttaataagtg |
37772064 |
T |
|
| Q |
101 |
ttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagctttaactagatgtttatagt |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37772065 |
ttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagctttaactagatgtttatagt |
37772139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 37772158 - 37772283
Alignment:
| Q |
219 |
gggaaaatgtttatagttccttttctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttcgaccttctcata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37772158 |
gggaaaatgtttatagttccttttctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttcgaccttctcata |
37772257 |
T |
|
| Q |
319 |
tctttattgttttcttttgcctttat |
344 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
37772258 |
tctttattgttttcttttgcctttat |
37772283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 37772347 - 37772408
Alignment:
| Q |
412 |
gatcaatttttcttggaactatgtcacatttggatgtagaaaggatctcttattcatttctt |
473 |
Q |
| |
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| T |
37772347 |
gatcaatttttcttggaactatgtcacatttggatgtagaaaggatctcttattcatctctt |
37772408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 41411536 - 41411425
Alignment:
| Q |
56 |
atcccaaatgtttgtgaccctcatttaaatgatttttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagc |
155 |
Q |
| |
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||||||||| |||||||| |||| || ||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41411536 |
atcccaaatatttgtgactgtcatgtagatggttcttaaaaagtgctagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagc |
41411437 |
T |
|
| Q |
156 |
tttaactagatg |
167 |
Q |
| |
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|||| ||||||| |
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| T |
41411436 |
tttagctagatg |
41411425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 341
Target Start/End: Complemental strand, 41411417 - 41411315
Alignment:
| Q |
240 |
tttctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttc-gaccttctcatatctttattgttttcttttgc |
338 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| || ||||| | | |||||||||||||| | || |||| | |||||||| |||||||||| |
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| T |
41411417 |
tttctttgcttcttaggaatagacttggcttgcttcctcaggcgtaacctctttctgtatagggttcaggccctctcctgcctttattgctttcttttgc |
41411318 |
T |
|
| Q |
339 |
ctt |
341 |
Q |
| |
|
||| |
|
|
| T |
41411317 |
ctt |
41411315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 27111360 - 27111262
Alignment:
| Q |
61 |
aaatgtttgtgaccctcatttaaatgatttttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagcttta |
159 |
Q |
| |
|
|||| |||||||| |||| || ||| || |||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
27111360 |
aaatatttgtgactgtcatgtagatggttcttaataagtgctagtagtttgttctgttgtttggcagcttaatttctttcgtttaaaagcaaaacttta |
27111262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 8308224 - 8308107
Alignment:
| Q |
56 |
atcccaaatgtttgtgaccctcatttaaatgatttttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagc |
155 |
Q |
| |
|
||||||||| ||||||| |||| || ||| || |||||||||| |||||||||| | ||||| |||| |||||| |||||||||||| |||||||||| |
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| T |
8308224 |
atcccaaatatttgtgattgtcatgtagatggttcttaataagtgctagtagctagatatgttgcttggtagcttagtttctttggtttcaaagcaaagc |
8308125 |
T |
|
| Q |
156 |
tttaactagatgtttata |
173 |
Q |
| |
|
|||| |||| ||||||| |
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|
| T |
8308124 |
tttagttagaggtttata |
8308107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 6596607 - 6596683
Alignment:
| Q |
91 |
ttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagctttaactagatg |
167 |
Q |
| |
|
|||||||||| | |||||||| |||||||||| || |||| |||||||||||||||||||| |||||| ||||||| |
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|
| T |
6596607 |
ttaataagtgctggtagctagctctgttgtttctcatcttagtttctttggtttaaaagcaatgctttagctagatg |
6596683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 344
Target Start/End: Original strand, 6596694 - 6596794
Alignment:
| Q |
243 |
ctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttc-gaccttctcatatctttattgttttcttttgcctt |
341 |
Q |
| |
|
||||| |||||| ||||||||||| |||||| |||| |||||||| ||||||||| |||||| | || |||| | |||||||| ||||||||||||| |
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| T |
6596694 |
ctttgtttcttaagaatagtcttggcttgctctctcaggtgtaac--ctatctgtatcgggttcaggccctctcctgcctttattgctttcttttgcctt |
6596791 |
T |
|
| Q |
342 |
tat |
344 |
Q |
| |
|
||| |
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|
| T |
6596792 |
tat |
6596794 |
T |
|
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