View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20024_low_8 (Length: 438)

Name: NF20024_low_8
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20024_low_8
NF20024_low_8
[»] chr7 (24 HSPs)
chr7 (18-431)||(41162830-41163243)
chr7 (42-130)||(29892878-29892966)
chr7 (47-130)||(30861992-30862075)
chr7 (42-94)||(48030256-48030308)
chr7 (42-145)||(8838365-8838468)
chr7 (42-126)||(21759814-21759898)
chr7 (46-128)||(19531767-19531849)
chr7 (45-100)||(19477162-19477217)
chr7 (45-126)||(1324805-1324885)
chr7 (105-150)||(48030006-48030051)
chr7 (45-125)||(4089429-4089508)
chr7 (47-122)||(39499864-39499938)
chr7 (42-128)||(3533738-3533824)
chr7 (47-93)||(11335001-11335047)
chr7 (70-151)||(41672435-41672517)
chr7 (53-126)||(26632951-26633024)
chr7 (45-126)||(48610064-48610144)
chr7 (45-126)||(48767662-48767743)
chr7 (43-83)||(22851139-22851179)
chr7 (42-118)||(23876131-23876207)
chr7 (42-126)||(28038815-28038899)
chr7 (45-125)||(28663852-28663931)
chr7 (42-118)||(29635976-29636052)
chr7 (45-126)||(36726099-36726182)
[»] chr8 (24 HSPs)
chr8 (42-151)||(45218383-45218492)
chr8 (45-151)||(7727252-7727358)
chr8 (66-131)||(45209999-45210064)
chr8 (45-125)||(45203855-45203935)
chr8 (47-126)||(38202920-38202999)
chr8 (45-126)||(12762939-12763020)
chr8 (45-126)||(25198386-25198467)
chr8 (42-126)||(24962293-24962377)
chr8 (47-121)||(3624713-3624786)
chr8 (59-126)||(11444073-11444138)
chr8 (58-150)||(12998592-12998684)
chr8 (65-188)||(36537753-36537874)
chr8 (45-126)||(38761284-38761367)
chr8 (89-128)||(13206665-13206704)
chr8 (57-100)||(35187503-35187546)
chr8 (56-102)||(38382904-38382951)
chr8 (47-118)||(38773284-38773355)
chr8 (45-126)||(36437598-36437680)
chr8 (45-111)||(38770130-38770196)
chr8 (45-126)||(57116-57197)
chr8 (62-130)||(7887793-7887862)
chr8 (53-126)||(43980511-43980584)
chr8 (47-130)||(12681-12760)
chr8 (45-125)||(26878657-26878737)
[»] chr2 (26 HSPs)
chr2 (47-128)||(43580754-43580834)
chr2 (45-126)||(7255698-7255779)
chr2 (42-151)||(26855180-26855289)
chr2 (45-126)||(13534502-13534583)
chr2 (42-128)||(30977509-30977595)
chr2 (45-118)||(27297674-27297747)
chr2 (42-126)||(34330096-34330178)
chr2 (103-195)||(18961270-18961362)
chr2 (45-126)||(534562-534643)
chr2 (53-126)||(2521227-2521300)
chr2 (53-126)||(17663729-17663802)
chr2 (53-126)||(20362087-20362160)
chr2 (45-126)||(28733920-28734001)
chr2 (74-139)||(33085250-33085315)
chr2 (42-82)||(6074279-6074319)
chr2 (47-126)||(15851630-15851710)
chr2 (42-126)||(45214819-45214903)
chr2 (54-124)||(7201239-7201309)
chr2 (45-126)||(44424692-44424771)
chr2 (45-118)||(4758123-4758196)
chr2 (71-128)||(11021435-11021492)
chr2 (61-126)||(27749580-27749645)
chr2 (42-126)||(41665804-41665886)
chr2 (46-154)||(16209254-16209362)
chr2 (47-126)||(32677574-32677654)
chr2 (52-92)||(43081876-43081916)
[»] chr6 (16 HSPs)
chr6 (21-145)||(24053340-24053466)
chr6 (45-126)||(31945840-31945921)
chr6 (42-151)||(34631223-34631332)
chr6 (42-126)||(5895825-5895909)
chr6 (47-118)||(3887878-3887949)
chr6 (47-126)||(28238242-28238320)
chr6 (105-151)||(24053548-24053594)
chr6 (59-145)||(21458907-21458995)
chr6 (45-126)||(30248959-30249039)
chr6 (58-125)||(1492906-1492973)
chr6 (74-128)||(3925005-3925059)
chr6 (45-118)||(1763910-1763983)
chr6 (53-126)||(19839036-19839109)
chr6 (45-126)||(30465896-30465977)
chr6 (45-85)||(12458574-12458614)
chr6 (97-161)||(32251235-32251299)
[»] chr3 (18 HSPs)
chr3 (50-196)||(52259135-52259281)
chr3 (41-130)||(28770121-28770210)
chr3 (73-151)||(33079838-33079914)
chr3 (46-126)||(41308705-41308785)
chr3 (42-125)||(22659673-22659756)
chr3 (45-128)||(26517142-26517225)
chr3 (45-126)||(35145327-35145409)
chr3 (49-126)||(28477485-28477561)
chr3 (45-126)||(31819502-31819583)
chr3 (64-127)||(47002829-47002892)
chr3 (48-126)||(42314035-42314113)
chr3 (45-126)||(20945229-20945310)
chr3 (75-144)||(29689984-29690053)
chr3 (45-126)||(30476137-30476218)
chr3 (42-126)||(31531056-31531141)
chr3 (45-125)||(5504505-5504585)
chr3 (45-118)||(39617189-39617260)
chr3 (96-128)||(29217639-29217671)
[»] chr4 (26 HSPs)
chr4 (42-139)||(21120117-21120214)
chr4 (45-126)||(43800905-43800986)
chr4 (43-94)||(8525636-8525687)
chr4 (45-126)||(24072864-24072945)
chr4 (45-126)||(25477322-25477403)
chr4 (45-128)||(44414086-44414166)
chr4 (79-150)||(21679795-21679866)
chr4 (45-118)||(22750777-22750850)
chr4 (45-125)||(51787868-51787947)
chr4 (42-126)||(54359777-54359860)
chr4 (42-125)||(8246342-8246425)
chr4 (42-125)||(8250471-8250554)
chr4 (89-151)||(31919858-31919920)
chr4 (45-115)||(44812545-44812615)
chr4 (45-126)||(52226116-52226198)
chr4 (47-128)||(13501077-13501158)
chr4 (45-126)||(20291437-20291517)
chr4 (42-107)||(20541368-20541433)
chr4 (42-118)||(43509175-43509252)
chr4 (45-118)||(46729402-46729475)
chr4 (45-126)||(52198655-52198736)
chr4 (18-94)||(5619725-5619801)
chr4 (164-196)||(10588074-10588106)
chr4 (45-125)||(10602138-10602218)
chr4 (42-94)||(31893470-31893522)
chr4 (42-126)||(40411270-40411354)
[»] chr5 (20 HSPs)
chr5 (45-166)||(4523906-4524027)
chr5 (45-126)||(35568931-35569012)
chr5 (45-151)||(7736077-7736183)
chr5 (45-119)||(29866286-29866360)
chr5 (45-126)||(16041-16122)
chr5 (45-126)||(8717885-8717966)
chr5 (45-122)||(35715392-35715469)
chr5 (53-126)||(39690412-39690485)
chr5 (45-125)||(4738727-4738806)
chr5 (45-93)||(27143925-27143973)
chr5 (47-130)||(14811189-14811272)
chr5 (52-126)||(3631044-3631117)
chr5 (42-100)||(10205461-10205519)
chr5 (45-115)||(25017611-25017681)
chr5 (42-128)||(32108074-32108160)
chr5 (45-126)||(3558953-3559034)
chr5 (45-118)||(5845273-5845346)
chr5 (53-126)||(21912225-21912298)
chr5 (49-118)||(36347535-36347604)
chr5 (47-119)||(38550692-38550764)
[»] chr1 (24 HSPs)
chr1 (42-151)||(34023899-34024008)
chr1 (45-126)||(3831143-3831224)
chr1 (45-126)||(23982518-23982599)
chr1 (42-126)||(49877865-49877950)
chr1 (48-126)||(328444-328522)
chr1 (45-111)||(897274-897340)
chr1 (45-126)||(5085015-5085096)
chr1 (47-128)||(8740303-8740381)
chr1 (53-126)||(15512707-15512780)
chr1 (53-126)||(28948890-28948963)
chr1 (45-126)||(33231936-33232017)
chr1 (45-126)||(34696809-34696890)
chr1 (45-118)||(44652795-44652868)
chr1 (45-126)||(48721795-48721875)
chr1 (46-130)||(17426648-17426731)
chr1 (67-139)||(27578705-27578777)
chr1 (42-125)||(34012580-34012662)
chr1 (44-130)||(35377546-35377629)
chr1 (30-109)||(41620290-41620369)
chr1 (45-115)||(46732897-46732967)
chr1 (89-125)||(24248744-24248780)
chr1 (42-126)||(36085063-36085147)
chr1 (45-125)||(51390465-51390544)
chr1 (45-112)||(52301218-52301286)
[»] scaffold1091 (1 HSPs)
scaffold1091 (45-126)||(1840-1921)
[»] scaffold0038 (1 HSPs)
scaffold0038 (47-126)||(38404-38482)
[»] scaffold0039 (2 HSPs)
scaffold0039 (42-77)||(93426-93461)
scaffold0039 (97-151)||(92797-92851)
[»] scaffold0013 (1 HSPs)
scaffold0013 (47-126)||(49236-49314)
[»] scaffold0533 (1 HSPs)
scaffold0533 (72-128)||(3385-3442)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 41162830 - 41163243
Alignment:
Q  18 ctttatgtataaatacattgagtcttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatct 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41162830 ctttatgtatgaatacattgagtcttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatct 41162929  T
Q  118 agaaatttgtatagggtcttatgtttagtgacaaccaattttttgtaaaggatgttataattagtgacggagggagtagtaaatgtgatatgaggaaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41162930 agaaatttgtatagggtcttatgtttagtgacaaccaattttttgtaaaggatgttataattagtgacggagggagtagtaaatgtgatatgaggaaagg 41163029  T
Q  218 agcataatgccgtacgttgtgttcggtacaaattaacaagtcttggcatgagtctgtattaacttagcatgctagcgcacatataatattccatgttaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41163030 agcataatgccgtacgttgtgttcggtacaaattaacaagtcttggcatgagtctgtattaacttagaatgctagcgcacatataatattccatgttaat 41163129  T
Q  318 gaagtatgatgatttaagcttttttcttttgacaaaacggatgatcgaagcttcgatgtttcattaattggaacaaattattaaacatgttgaagttttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41163130 gaagtatgatgatttaagcttttttcttttgacaaaacggatgatcgaagcttcgatgtttcattaattggaacaaattattaaacatgttgaagttttt 41163229  T
Q  418 taaggtagcctttg 431  Q
    ||||||||||||||    
T  41163230 taaggtagcctttg 41163243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 29892878 - 29892966
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||||||||  ||||||||||| | ||||||||| ||||||||||    
T  29892878 ttaacttttcatataccaaaacaaattggtagtattaataaggggtatatttgaaaaaagagtaatcactgcatctaggaatttgtata 29892966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 30861992 - 30862075
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    ||||||||| |||| ||||||||||| |||||||||| | | ||||| | |||||||||||||||| |||||||||||||||||    
T  30861992 ttttcatataccaaaacaaattggtaatattaataagaggtgtattttgaaaaagagtaataaatgtatctagaaatttgtata 30862075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 48030308 - 48030256
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttg 94  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  48030308 ttaacttttcatattccaagataaatttgtagtattaataagggatatatttg 48030256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 8838468 - 8838365
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgt 141  Q
    ||||||||||||||  |||||||||||||||||||||||||| | |||||||   |||||| |||| ||||||| ||  ||||| |||| | ||||||||    
T  8838468 ttaacttttcatatatcaagacaaattggtagtattaataagaggtatatttaaaaaaagaataatcaatgcatttaagaatttatatatgatcttatgt 8838369  T
Q  142 ttag 145  Q
    ||||    
T  8838368 ttag 8838365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 21759814 - 21759898
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||| |||| ||||||||||| |||| |||||| | || ||| ||| |||||| |||||||||||||||||| ||||||    
T  21759814 ttaacttttcgtatttcaagacaaattagtaggattaattacgggtatgtttaggaaaaaagtaataaatgcatctagtaatttg 21759898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 19531849 - 19531767
Alignment:
Q  46 cttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    ||||||||||| ||||| | |||| | ||| ||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||    
T  19531849 cttttcatatttcaagatacattgatggtactaataaggggtatgtttggaaaaagagtaataaatgtatctaaaaatttgta 19531767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 19477217 - 19477162
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaa 100  Q
    |||||||||||| ||||| ||||| ||||||||||| |||||||||||| ||||||    
T  19477217 acttttcatatttcaagataaattagtagtattaattagggatatatttaggaaaa 19477162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 1324805 - 1324885
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||| ||||||| ||||||    
T  1324805 acttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaa-aataataaattcatctagtaatttg 1324885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 48030051 - 48030006
Alignment:
Q  105 aataaatgcatctagaaatttgtatagggtcttatgtttagtgaca 150  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  48030051 aataaatgcatctagaaatttgtagagggtcttatatttagggaca 48030006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 4089508 - 4089429
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||||||||||| ||||||||  | ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| |||||    
T  4089508 acttttcatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaa-aataataaatgcatctagtaattt 4089429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 39499938 - 39499864
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaa 122  Q
    |||||||||||||||| ||||| ||||||||||  |||| ||| ||| |||||| | |||| ||||||||||||||    
T  39499938 ttttcatattccaagagaaattagtagtattaactagggttatgttt-ggaaaaaaataattaatgcatctagaaa 39499864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 3533738 - 3533824
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    ||||||||| |||||  |||||||||| |||| ||||||||| |||| ||||   | |||||||||||||| || || |||||||||    
T  3533738 ttaacttttaatattttaagacaaatttgtaggattaataagagatacattttaaagaagagtaataaatgtatttaaaaatttgta 3533824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 11335047 - 11335001
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatattt 93  Q
    |||||||||| |||||||||||| || |||||||||| |||||||||    
T  11335047 ttttcatatttcaagacaaattgataatattaataagcgatatattt 11335001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 41672517 - 41672435
Alignment:
Q  70 gtagtattaataagggatatatttgggaaaagag-taataaatgcatctagaaatttgtatagggtcttatgtttagtgacaa 151  Q
    ||||||||||| |||| ||| ||| |||||| |  |||||||||||||||| |||||||||| || ||||| ||||| |||||    
T  41672517 gtagtattaattaggggtatgtttaggaaaaaaaataataaatgcatctagtaatttgtataagggcttatatttagggacaa 41672435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 26632951 - 26633024
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||  | |||||||||||||||| ||||||    
T  26632951 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaagtaataataaatgcatctagtaatttg 26633024  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 48610144 - 48610064
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | || |||||||| |||||||| |||  ||||| | |||||||||||||||| ||||||    
T  48610144 acttttcatatttcaagacaagatagtggtattaattagggatatgttt-agaaaaaaataataaatgcatctagtaatttg 48610064  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 48767662 - 48767743
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||  ||  |||||||||| |||| ||| ||| |||||| |  ||||||||||||||| ||||||    
T  48767662 acttttcatatttcaagacatgttattagtattaattaggggtatgtttaggaaaaaataaataaatgcatctagtaatttg 48767743  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 22851179 - 22851139
Alignment:
Q  43 taacttttcatattccaagacaaattggtagtattaataag 83  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  22851179 taacttttcatattccaaaataaattgatagtattaataag 22851139  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 23876131 - 23876207
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||| |||| ||||||||||| |||  |||||| || | ||| ||| |||||| | |||||||||||||||    
T  23876131 ttaacttttcgtatttcaagacaaattagtatgattaattagtggtatgtttaggaaaataataataaatgcatcta 23876207  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 28038899 - 28038815
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||||| |||||||| || | ||||||||| | | |||| ||| ||||||   |||||||| ||||||| ||||||    
T  28038899 ttaacttttcatatttcaagacaagttagcagtattaattatgaatatgtttaggaaaaacataataaatacatctagtaatttg 28038815  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 28663852 - 28663931
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||| ||||||| ||||| ||||| ||||||||||| |||| ||| ||| |||||| | | |||||||||||||| |||||    
T  28663852 acttctcatatttcaagataaattagtagtattaattaggggtatgtttaggaaaa-aatcataaatgcatctagtaattt 28663931  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 29636052 - 29635976
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||| |||||||||| |||||||| || |||||| || | |||||| | ||| |||||| | |||||||||||||||    
T  29636052 ttaatttttcatatttcaagacaagttagtagtactacttagggatctgtttaggaaaaaaataataaatgcatcta 29635976  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 36726182 - 36726099
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttggg--aaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||| |||| |||||||||||||| |||| ||  ||| ||  |||| | |||||||||||||||| ||||||    
T  36726182 acttttcatatttcaaaacaagttggtagtattaattaggggtaagtttaggaaaaaaaaataataaatgcatctagtaatttg 36726099  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 45218492 - 45218383
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgt 141  Q
    |||||||||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||  ||| |||||||||| ||||||| ||| | |||||| |    
T  45218492 ttaacttttcatataccaagacaaattggtaatattaataaggggtatatttggaaaaagatgaatcaatgcatctaaaaatttggatatgatcttatat 45218393  T
Q  142 ttagtgacaa 151  Q
    |||| |||||    
T  45218392 ttagagacaa 45218383  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 7727358 - 7727252
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgttta 144  Q
    ||||||||||||||||||||| || ||||||||||| |||| |||||||||  ||| | ||||||||||| |||  ||||||||||| | ||||| ||||    
T  7727358 acttttcatattccaagacaagttagtagtattaattagggttatatttggagaaaaaataataaatgcacctaataatttgtatagtggcttatattta 7727259  T
Q  145 gtgacaa 151  Q
    | |||||    
T  7727258 gagacaa 7727252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 45210064 - 45209999
Alignment:
Q  66 attggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatag 131  Q
    ||||||||||||| |||| ||||||||||| ||| || |||||||||||| |||||||||||||||    
T  45210064 attggtagtattagtaagtgatatatttggaaaatgaataataaatgcatatagaaatttgtatag 45209999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 45203855 - 45203935
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| |||||    
T  45203855 acttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaataataataaatgcatctagtaattt 45203935  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 38202999 - 38202920
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||| ||||||||  ||||||||||||| |||| |||||||  ||||| | |||||||||||||||| ||||||    
T  38202999 ttttcatatttcaagacaagatggtagtattaattaggggtatatttaagaaaaaaataataaatgcatctagtaatttg 38202920  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 12762939 - 12763020
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| || ||| ||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  12762939 acttttcatatttcaagacaagttagtaatattaattaggggtatctttaggaaaaaaataataaatgcatctagtaatttg 12763020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 25198386 - 25198467
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||| || || ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  25198386 acttttcatatttcaagataagttagtagtattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 25198467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 24962377 - 24962293
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||  |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  24962377 ttaactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 24962293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 3624786 - 3624713
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaa 121  Q
    |||||||||||||||  ||||| ||||||||||| |||| ||| ||| |||||| | ||||||||||||||||||    
T  3624786 ttttcatattccaaggtaaattagtagtattaattagggttatgttt-ggaaaaaaataataaatgcatctagaa 3624713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 11444073 - 11444138
Alignment:
Q  59 aagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||| ||||||||||| |||| |||||||||  ||| | |||||||||||||||| ||||||    
T  11444073 aagacaaattagtagtattaattagggttatatttgg--aaaaaataataaatgcatctagtaatttg 11444138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 12998684 - 12998592
Alignment:
Q  58 caagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgaca 150  Q
    |||||||| || ||||||||||| |||| ||| ||| |||||| | |||| |||||||| || |||||||||| || ||||| ||||| ||||    
T  12998684 caagacaagttagtagtattaattaggggtatgtttaggaaaaaaataattaatgcatcgagtaatttgtataagggcttatatttagggaca 12998592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 36537753 - 36537874
Alignment:
Q  65 aattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgacaaccaattttttgta 164  Q
    ||||||||||||||||||||  |||| |||  ||| |||||| |||| |||||||||||||||  | |||||||  |||||  ||||   ||||||||||    
T  36537753 aattggtagtattaataaggagtataattgaaaaaggagtaagaaatacatctagaaatttgtgaatggtcttacatttaggaacaa--tattttttgta 36537850  T
Q  165 aaggatgttataattagtgacgga 188  Q
    |  ||| |||||||||| ||||||    
T  36537851 attgatcttataattagggacgga 36537874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 38761367 - 38761284
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgg--gaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | ||||||||||| |||||||| ||| |  ||||| | |||||||||||||||| ||||||    
T  38761367 acttttcatatttcaagacaagatagtagtattaattagggatatgtttagaagaaaaaaataataaatgcatctagtaatttg 38761284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 13206704 - 13206665
Alignment:
Q  89 tatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  13206704 tatttggaaaaagagtaataaatgcatctacaaatttgta 13206665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 35187503 - 35187546
Alignment:
Q  57 ccaagacaaattggtagtattaataagggatatatttgggaaaa 100  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||    
T  35187503 ccaagacaaattagtagtattaataagagatatatttggaaaaa 35187546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 38382951 - 38382904
Alignment:
Q  56 tccaagacaaattggtagtattaataa-gggatatatttgggaaaaga 102  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  38382951 tccaagacaaattggtagtattaataaggggaaatatttggaaaaaga 38382904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 38773355 - 38773284
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||| ||||||||  ||||||||||||| || | ||| ||| |||||| | |||||||||||||||    
T  38773355 ttttcatatttcaagacaagatggtagtattaattagaggtatgtttaggaaaaaaataataaatgcatcta 38773284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 36437598 - 36437680
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatattt-gggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| || ||||||||| | |||| ||| ||| || |||| | |||||||||||||||| ||||||    
T  36437598 acttttcatatttcaagacaagttagtagtattagttaggggtatgtttaggcaaaaaaataataaatgcatctagtaatttg 36437680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 38770196 - 38770130
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaat 111  Q
    |||||||||||| ||||||||   | |||||||||| |||||||||||| |||||| | ||||||||    
T  38770196 acttttcatatttcaagacaagaggatagtattaattagggatatatttaggaaaaaaataataaat 38770130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 57197 - 57116
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  |  |||||||||| | || ||| ||| |||||| | |||||||||||||||| ||||||    
T  57197 acttttcatatttcaagacaagataatagtattaattaagggtatgtttaggaaaaaaataataaatgcatctagtaatttg 57116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 7887862 - 7887793
Alignment:
Q  62 acaaattggtagtattaataagggatatatttg-ggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    |||||||  ||||||||||||||||||||||||   |||||||||||  |||||| ||| ||||||||||    
T  7887862 acaaattaatagtattaataagggatatatttgaataaaagagtaatcgatgcatataggaatttgtata 7887793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 43980584 - 43980511
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||| ||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  43980584 tatttcaagataaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 43980511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 12681 - 12760
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    |||||||||||||||| || ||| |||||||||||||| ||||| |||  |||| | |||||||| |||||| |||||||||||    
T  12681 ttttcatattccaagataatttg-tagtattaataagg-atatagttg--aaaaaaataataaatacatctaaaaatttgtata 12760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 26878737 - 26878657
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    ||||| |||||| ||||| || || ||||||||||| |||| ||| ||| |||||| | |||||||| ||||||| |||||    
T  26878737 actttacatatttcaagataagttagtagtattaattaggggtatgtttaggaaaaaaataataaatacatctagtaattt 26878657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 43580754 - 43580834
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    |||||||||||||||| ||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  43580754 ttttcatattccaagataaattggtattattaataagggatagattt-gtaaaagagtaataaatgcatctagaaatttgta 43580834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 7255698 - 7255779
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||| ||| |||||| | |||||||| ||||||| ||||||    
T  7255698 acttttcatatttcaagacaaattagtagtattaattagggatatgtttaggaaaataataataaatacatctagtaatttg 7255779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 26855289 - 26855180
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgt 141  Q
    ||||||||||||||||||||| | |||| ||| |||||||||||  |||| ||| | |||||||||||| |||| || ||||||||| | |||||||| |    
T  26855289 ttaacttttcatattccaagatacattgatagaattaataaggggcatatgtggaataagagtaataaaagcatttataaatttgtagatggtcttatat 26855190  T
Q  142 ttagtgacaa 151  Q
    |||| |||||    
T  26855189 ttagggacaa 26855180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 13534502 - 13534583
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| || ||||||||||| |||||||| ||| |||||| | ||||||| |||||||| ||||||    
T  13534502 acttttcatatttcaagacaagttagtagtattaattagggatatgtttaggaaaaaattaataaacgcatctagtaatttg 13534583  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 30977595 - 30977509
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    |||||||||| |||| ||||| |||||| |||||||||| |  | |||| |||| ||| ||||||||||| ||||||||||||||||    
T  30977595 ttaacttttcgtatttcaagataaattgatagtattaatcaatggtatagttggaaaaggagtaataaatacatctagaaatttgta 30977509  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 27297674 - 27297747
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||||| ||||||||  | ||||||||||| |||||||| ||| |||||| | |||||||||||||||    
T  27297674 acttttcatatttcaagacaagatagtagtattaattagggatatgtttaggaaaaaaataataaatgcatcta 27297747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 34330096 - 34330178
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||||| ||||||||  | ||||||||||| |||||||| ||| |||||| |  ||||||||||||||| ||||||    
T  34330096 ttaacttttcatatttcaagacaagatagtagtattaatcagggatatgtttaggaaaaaa--aataaatgcatctagtaatttg 34330178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 18961362 - 18961270
Alignment:
Q  103 gtaataaatgcatctagaaatttgtatagggtcttatgtttagtgacaaccaattttttgtaaaggatgttataattagtgacggagggagta 195  Q
    |||||||||||||||||||||| ||| | |||||||| ||||| |||||   ||||||| |||| | | ||| |||||| |||||||||||||    
T  18961362 gtaataaatgcatctagaaattggtagatggtcttatatttagggacaaagcattttttataaatggtcttacaattagggacggagggagta 18961270  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 534562 - 534643
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  |  |||||||||| |||| ||||||| |||||| |  ||||||||||||||| ||||||    
T  534562 acttttcatatttcaagacaagataatagtattaattaggggtatatttaggaaaaaaaaaataaatgcatctagtaatttg 534643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 2521300 - 2521227
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  2521300 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagcaatttg 2521227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 17663729 - 17663802
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  17663729 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 17663802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 20362087 - 20362160
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  20362087 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 20362160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 28733920 - 28734001
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||| ||||| ||||| ||||| ||||||||||| |||| ||| ||| |||||| | |||||||||||| ||| ||||||    
T  28733920 actttttatatttcaagataaattagtagtattaattaggggtatgtttaggaaaacaataataaatgcatatagtaatttg 28734001  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 33085250 - 33085315
Alignment:
Q  74 tattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttat 139  Q
    |||||||||||| ||||||||| ||||||||||| ||| ||| || ||||||||||| | ||||||    
T  33085250 tattaataagggttatatttggaaaaagagtaatcaatacatataaaaatttgtatatgatcttat 33085315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 6074319 - 6074279
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataa 82  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  6074319 ttaacttttcatataccaagacaaatttgtagtattaataa 6074279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 15851630 - 15851710
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatattt-gggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||| ||||||||| | ||||||||||| |||| ||| ||| || |||| | |||||||||||||||| ||||||    
T  15851630 ttttcatatttcaagacaaaatagtagtattaattaggggtatgtttaggaaaaataataataaatgcatctagtaatttg 15851710  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 45214819 - 45214903
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||||||  |||| ||||| ||||||||||| |||| ||| |||  ||||| | ||||||||| |||||| ||||||    
T  45214819 ttaacttttcatattttaagataaattagtagtattaattaggggtatgtttaagaaaaaaataataaatgtatctagtaatttg 45214903  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 7201239 - 7201309
Alignment:
Q  54 attccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatt 124  Q
    |||| ||||||||||| ||||||||  |||  |||||||||  |||||||||||||||| ||||| |||||    
T  7201239 attctaagacaaattgttagtattaggaagaaatatatttgaaaaaagagtaataaatgtatctaaaaatt 7201309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 44424692 - 44424771
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | ||||||||||| |||| ||| ||| |||||| |  ||||||||||||||| ||||||    
T  44424692 acttttcatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaaaa--aataaatgcatctagtaatttg 44424771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 4758123 - 4758196
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    ||||| ||||||  |||| ||||| ||||||||||| ||| |||| ||| |||||| | |||||||||||||||    
T  4758123 actttacatattttaagaaaaattagtagtattaattaggaatatgtttaggaaaaaaataataaatgcatcta 4758196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 11021492 - 11021435
Alignment:
Q  71 tagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    |||| ||| |||| |||||| |||||||||||||||| ||||||| || |||||||||    
T  11021492 tagtgttattaagtgatatagttgggaaaagagtaatgaatgcatttaaaaatttgta 11021435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 27749580 - 27749645
Alignment:
Q  61 gacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||| || ||||||||||| |||| ||| ||| |||||| |||||||||||||||| | ||||||    
T  27749580 gacaagttagtagtattaattaggggtatgtttaggaaaaaagtaataaatgcatcttgtaatttg 27749645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 41665804 - 41665886
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||||| |||||||| ||  |||||||||| |||| ||| ||| |||||| |  |||||| |||||||| ||||||    
T  41665804 ttaacttttcatatttcaagacaagttaatagtattaattaggggtatgtttaggaaaaaa--aataaaagcatctagtaatttg 41665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 16209362 - 16209254
Alignment:
Q  46 cttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttag 145  Q
    ||||| ||||||||||| |||||| || | || |||||  |||||||||| ||| || |||||||||||| ||  ||||| ||| | ||||||| ||||     
T  16209362 ctttttatattccaagataaattgataatgttgataagcaatatatttggtaaaggaataataaatgcatataataatttatattgagtcttatatttaa 16209263  T
Q  146 tgacaacca 154  Q
     ||||||||    
T  16209262 cgacaacca 16209254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 32677574 - 32677654
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaaga-gtaataaatgcatctagaaatttg 126  Q
    |||||||||| ||||||||||| ||||||||||| |||| ||| ||| | |||| |  ||||||||| |||||| ||||||    
T  32677574 ttttcatatttcaagacaaattagtagtattaattaggggtatgtttagaaaaaaacataataaatgtatctagtaatttg 32677654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 43081876 - 43081916
Alignment:
Q  52 atattccaagacaaattggtagtattaataagggatatatt 92  Q
    ||||| |||||||||||| ||||||||||||| ||||||||    
T  43081876 atattacaagacaaattgatagtattaataagagatatatt 43081916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 24053340 - 24053466
Alignment:
Q  21 tatgtataaatacattgagtcttaacttttcatattccaagacaaattggtagtattaataagggatatattt--gggaaaagagtaataaatgcatcta 118  Q
    |||||||||||||||| ||| || | |||| |||||| |||| |||||| ||||||||||||| |||||||||  || |||| |||||||| ||||| ||    
T  24053340 tatgtataaatacatttagtgtttattttttatattctaagataaattgatagtattaataagagatatatttgaggaaaaaaagtaataagtgcatata 24053439  T
Q  119 gaaatttgtatagggtcttatgtttag 145  Q
    |||||||||| |||||||||| |||||    
T  24053440 gaaatttgtagagggtcttatatttag 24053466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 31945921 - 31945840
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||| |||||| |||||||| || ||||||||||| |||||||| ||| |||||| | |||||||||||||||| ||||||    
T  31945921 actttacatatttcaagacaagttagtagtattaattagggatatgtttaggaaaaaaataataaatgcatctagtaatttg 31945840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 34631332 - 34631223
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgt 141  Q
    |||| |||||||||||||||| | |||| ||| |||||||||||  |||| ||| | |||||||||||| |||| || ||||||||| | | |||||| |    
T  34631332 ttaagttttcatattccaagatacattgatagaattaataaggggcatatgtggaataagagtaataaaagcatttataaatttgtagatgctcttatat 34631233  T
Q  142 ttagtgacaa 151  Q
    |||| |||||    
T  34631232 ttagggacaa 34631223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 5895825 - 5895909
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||||| ||||||||  | || |||||||| ||||  |||||| |||||| | |||||||||||||||| ||||||    
T  5895825 ttaacttttcatatttcaagacaagatagtggtattaattaggggcatatttaggaaaaaattaataaatgcatctagtaatttg 5895909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 3887949 - 3887878
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||||||    
T  3887949 ttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatcta 3887878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 28238320 - 28238242
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  28238320 ttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaa-aataataaatgcatctagtaatttg 28238242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 24053594 - 24053548
Alignment:
Q  105 aataaatgcatctagaaatttgtatagggtcttatgtttagtgacaa 151  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||||    
T  24053594 aataaatgcatctagaaatttgtagagggtcttatatttagggacaa 24053548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 21458995 - 21458907
Alignment:
Q  59 aagacaaattggtagtattaataagggatatatttgggaaaa--gagtaataaatgcatctagaaatttgtatagggtcttatgtttag 145  Q
    |||| |||||| |||||||| ||||  ||||||||||| |||  ||||||||| ||||| |||||||||||| ||||| |||| |||||    
T  21458995 aagataaattgatagtattagtaagaaatatatttggggaaaatgagtaataagtgcatatagaaatttgtagagggttttatatttag 21458907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 30248959 - 30249039
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | ||||||||| |||||| ||||||    
T  30248959 acttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaa-aataataaatggatctagtaatttg 30249039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 1492973 - 1492906
Alignment:
Q  58 caagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    ||||||||||||||||| || ||||| ||||||||  | |||||||||| |||| |||||| ||||||    
T  1492973 caagacaaattggtagtttttataagagatatattcagaaaaagagtaaaaaatacatctaaaaattt 1492906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 3925005 - 3925059
Alignment:
Q  74 tattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    ||||||| |||||||||||| | ||||||||||||||| ||| || |||||||||    
T  3925005 tattaattagggatatatttagaaaaagagtaataaatacatttaaaaatttgta 3925059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 1763910 - 1763983
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||| ||| |||||||| || ||||||||||| | || ||| ||| |||||| | |||||||||||||||    
T  1763910 acttttcaaatttcaagacaagttagtagtattaattaagggtatgtttaggaaaataataataaatgcatcta 1763983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 19839036 - 19839109
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||| ||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  19839036 tatttcaagataaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 19839109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 30465977 - 30465896
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||| || || ||||||||||| | ||  || ||| |||||| | |||||||||||||||| ||||||    
T  30465977 acttttcatatttcaagataagttagtagtattaattaaggggatgtttaggaaaaaaataataaatgcatctagtaatttg 30465896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 12458574 - 12458614
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataaggg 85  Q
    ||||||||||||||||||||||||  || ||||||||||||    
T  12458574 acttttcatattccaagacaaattcataatattaataaggg 12458614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 32251235 - 32251299
Alignment:
Q  97 aaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgacaaccaatttttt 161  Q
    |||||||||||||||| ||||| ||||||||| |  ||||||| || || |||||||| ||||||    
T  32251235 aaaagagtaataaatgaatctaaaaatttgtagatagtcttatattaagggacaaccactttttt 32251299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 52259281 - 52259135
Alignment:
Q  50 tcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgac 149  Q
    ||||||||||||| | | || ||||||||||||||| |||| | || |||||||||||||||||||||||||||| |||||  ||||||| ||||||| |    
T  52259281 tcatattccaagatacaatgatagtattaataaggggtatactgggaaaaagagtaataaatgcatctagaaattagtatatagtcttatatttagtgtc 52259182  T
Q  150 aaccaattttttgtaaaggatgttataattagtgacggagggagtag 196  Q
    ||    ||||||||||| | | ||| |||||| |||| |||||||||    
T  52259181 aaaactttttttgtaaatggtcttacaattagggacgtagggagtag 52259135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 28770210 - 28770121
Alignment:
Q  41 cttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||||||||||   ||||||||||  ||||||||||| | ||||||||    
T  28770210 cttaacttttcatataccaaaacaaattgatagtattaataagggatatatttaaaaaaagagtaaataatgcatctaggattttgtata 28770121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 33079838 - 33079914
Alignment:
Q  73 gtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgacaa 151  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||| ||||| |||||    
T  33079838 gtattaataagggatatatttgg--aaagagtaataaatgcatctacaaatttgtagaggctcttatatttagggacaa 33079914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 41308785 - 41308705
Alignment:
Q  46 cttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  41308785 cttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatctagtaatttg 41308705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 22659673 - 22659756
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    ||||||||||||||| ||| ||||||| ||||||||||| | |||||| |||  ||||| | |||||||||||||||| |||||    
T  22659673 ttaacttttcatatttcaaaacaaattagtagtattaattaaggatatgtttatgaaaataataataaatgcatctagtaattt 22659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 26517225 - 26517142
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    |||||||||||| |||||||| || ||||||||||| |||| ||| ||| || ||| | |||||||||||||||| ||||||||    
T  26517225 acttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggcaaaaaataataaatgcatctagtaatttgta 26517142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 35145327 - 35145409
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatattt-gggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||| ||||| ||||||| |||||||| ||| || |||| | |||||||||||||||| ||||||    
T  35145327 acttttcatatttcaagacaaaatggtaatattaattagggatatgtttaggaaaaaaaataataaatgcatctagtaatttg 35145409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 28477485 - 28477561
Alignment:
Q  49 ttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||| ||||||||||| ||||||||||| |||| |||||||  ||||| | |||||||||||||||| ||||||    
T  28477485 ttcatatttcaagacaaattagtagtattaattaggggtatattttagaaaa-aataataaatgcatctagtaatttg 28477561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 31819502 - 31819583
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  31819502 acttttcatatttcaagacaatatagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatctagtaatttg 31819583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 47002892 - 47002829
Alignment:
Q  64 aaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgt 127  Q
    |||||||||||||||||||||| |||| || | ||||||||||  |||||||||| ||||||||    
T  47002892 aaattggtagtattaataaggggtataatttgaaaaagagtaacgaatgcatctaaaaatttgt 47002829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 42314113 - 42314035
Alignment:
Q  48 tttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||| ||||  | |||| || ||||||| |||| | ||||||| ||||||||||||||||| ||||||||||||    
T  42314113 tttcatatttcaaggtatattgataatattaatgaggggtgtatttggaaaaagagtaataaatgcgtctagaaatttg 42314035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 20945310 - 20945229
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||  ||||||| || ||||||||||| |||| ||| ||| |||||| | ||| |||||||||||| ||||||    
T  20945310 acttttcatattttaagacaagttagtagtattaattagggttatgtttaggaaaataataacaaatgcatctagtaatttg 20945229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 29689984 - 29690053
Alignment:
Q  75 attaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgttta 144  Q
    |||||| |||||| ||||||  |||||||||| ||||||||||||||||| ||| | |||||||| ||||    
T  29689984 attaatgagggatgtatttgaaaaaagagtaacaaatgcatctagaaattggtagatggtcttatattta 29690053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 30476137 - 30476218
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||| ||  | ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  30476137 acttttcatatttcaagagaagatagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatctagtaatttg 30476218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 31531141 - 31531056
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatattt-gggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||| ||| |||||||| || ||||||||||| |||| ||| ||| || |||| | |||||||||||||||| ||||||    
T  31531141 ttaacttttcaaatttcaagacaagttagtagtattaattaggggtatgtttaggaaaaataataataaatgcatctagtaatttg 31531056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 5504585 - 5504505
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||||||||||| ||||||||  | ||||||||||| |||| ||| ||| |||||| | |||||||||||| ||| |||||    
T  5504585 acttttcatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatatagtaattt 5504505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 39617260 - 39617189
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||||| ||||||||    ||||||||||| ||||||||||||  ||||| | |||||||||||||||    
T  39617260 acttttcatatttcaagacaaga--gtagtattaattagggatatatttaagaaaaaaataataaatgcatcta 39617189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 29217639 - 29217671
Alignment:
Q  96 gaaaagagtaataaatgcatctagaaatttgta 128  Q
    |||||||||||||||| ||||||||||||||||    
T  29217639 gaaaagagtaataaatacatctagaaatttgta 29217671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 21120214 - 21120117
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttat 139  Q
    ||||||||| ||||  |||||||||||  ||||||||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||| | ||||||    
T  21120214 ttaacttttgatatatcaagacaaattattagtattaataaggggtatatttggaaaaagagtaatcaatacatctagaaatttgtatatgatcttat 21120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 43800905 - 43800986
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| |||||||||||||| |||| ||||||| |||||| | ||||||||| |||||| ||||||    
T  43800905 acttttcatatttcaagacaagttggtagtattaattaggggtatatttaggaaaataataataaatgtatctagtaatttg 43800986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 8525687 - 8525636
Alignment:
Q  43 taacttttcatattccaagacaaattggtagtattaataagggatatatttg 94  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  8525687 taacttttcatataccaagacaaattgatagtattaataaggggtatatttg 8525636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 24072864 - 24072945
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  ||||||||||||| | || ||| ||| |||||| | |||||||||||||||| ||||||    
T  24072864 acttttcatatttcaagacaagatggtagtattaattaagggtatgtttaggaaaaaaataataaatgcatctagtaatttg 24072945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 25477322 - 25477403
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  25477322 acttttcatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatctagtaatttg 25477403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 44414086 - 44414166
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    |||||||||||| |||||| ||||| ||||||||||||||||| |||||||  |||||| ||||   | |||||||||||||||    
T  44414086 acttttcatatttcaagaccaattgatagtattaataagggatgtatttggagaaagagcaata---gtatctagaaatttgta 44414166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 21679866 - 21679795
Alignment:
Q  79 ataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgaca 150  Q
    ||||||| ||||||| | |||||| |||||||||||||||| |||||||||| | |||||| ||||| ||||    
T  21679866 ataaggggtatatttagaaaaagattaataaatgcatctaggaatttgtatatgatcttatatttagggaca 21679795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 22750850 - 22750777
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||||| |||||||| || ||||||||||| |||| ||| | | |||||| | |||||||||||||||    
T  22750850 acttttcatatttcaagacaacttagtagtattaattaggggtatgtataggaaaataataataaatgcatcta 22750777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 51787868 - 51787947
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||||||||||| ||||||||| |  |||||||||| |||||||| ||| |||||| | ||||||||| |||||| |||||    
T  51787868 acttttcatatttcaagacaaaataatagtattaattagggatatgtttaggaaaa-aataataaatgtatctagtaattt 51787947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 54359777 - 54359860
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||||| ||||||||  | ||||||||||| |||  ||| ||| |||||| | |||||||||||||||| ||||||    
T  54359777 ttaacttttcatatttcaagacaagatagtagtattaattaggtgtatgtttaggaaaa-aataataaatgcatctagtaatttg 54359860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 8246342 - 8246425
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||| |||||||||| |||||||||||  |||||||||| | | |||| ||| |||||| | |||||||| ||||||| |||||    
T  8246342 ttaatttttcatatttcaagacaaattaatagtattaattatgaatatgtttaggaaaaaaataataaatacatctagtaattt 8246425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 8250471 - 8250554
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||| |||||||||| |||||||||||  |||||||||| | | |||| ||| |||||| | |||||||| ||||||| |||||    
T  8250471 ttaatttttcatatttcaagacaaattaatagtattaattatgaatatgtttaggaaaaaaataataaatacatctagtaattt 8250554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 31919858 - 31919920
Alignment:
Q  89 tatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgacaa 151  Q
    ||||||| ||||| |||||||||||||||| |||||||| ||  ||||||| ||||| |||||    
T  31919858 tatttggaaaaagtgtaataaatgcatctaaaaatttgtctatagtcttatatttagggacaa 31919920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 44812615 - 44812545
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcat 115  Q
    |||||||||||| ||| ||||| | ||||||||||| |||| ||| ||| |||||| | ||||||||||||    
T  44812615 acttttcatatttcaaaacaaaatagtagtattaattaggggtatctttaggaaaaaaataataaatgcat 44812545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 52226116 - 52226198
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatattt-gggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| || ||||||||||| |||| ||| |||  | |||| | |||||||||||||||| ||||||    
T  52226116 acttttcatatttcaagacaagttagtagtattaattaggggtatgtttaagaaaaataataataaatgcatctagtaatttg 52226198  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 13501158 - 13501077
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    ||||||||||  |||| |||||| |||||||||||| |  ||||||||  |||||| |||||||||||| ||  ||||||||    
T  13501158 ttttcatattgtaagataaattgatagtattaataaagagtatatttgaaaaaagaataataaatgcatttaacaatttgta 13501077  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 20291437 - 20291517
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||| || || ||||||||||| | |||||| ||| |||||| |||||||||| ||| ||| ||||||    
T  20291437 acttttcatatttcaagataagttagtagtattaatta-ggatatgtttaggaaaaaagtaataaatacatttagtaatttg 20291517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 20541433 - 20541368
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaat 107  Q
    ||||||||||||||  ||||  |||||||||||||||||||  | ||||||||| |||||| ||||    
T  20541433 ttaacttttcatatatcaaggaaaattggtagtattaataaatggtatatttggaaaaagactaat 20541368  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 43509175 - 43509252
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatattt-gggaaaagagtaataaatgcatcta 118  Q
    ||||||||||| ||| ||||||||||| ||||||||||| |||| ||| |||  | |||| | |||||||||||||||    
T  43509175 ttaacttttcaaatttcaagacaaattagtagtattaattaggggtatctttaagaaaaaaaataataaatgcatcta 43509252  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 46729402 - 46729475
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||||| |||| |||  || | |||||||| |||| ||| |||||||||| | |||||||||||||||    
T  46729402 acttttcatatttcaaggcaagatgatggtattaattaggggtatgtttgggaaaaaaataataaatgcatcta 46729475  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 52198736 - 52198655
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||| ||||| ||| |||| || ||||||||||| |||| ||| ||| |||||| | ||||||||| |||||| ||||||    
T  52198736 actttttatatttcaaaacaagttagtagtattaattaggggtatgtttaggaaaaaaataataaatgtatctagtaatttg 52198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5619725 - 5619801
Alignment:
Q  18 ctttatgtataaatacattgagtcttaacttttcatattccaagacaaattggtagtattaataagggatatatttg 94  Q
    ||||||||||||||||||| | | |  | ||||||||||||||   || |||| |||| ||||||||||||||||||    
T  5619725 ctttatgtataaatacattcaatgtggatttttcatattccaatgtaatttggcagtactaataagggatatatttg 5619801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 10588106 - 10588074
Alignment:
Q  164 aaaggatgttataattagtgacggagggagtag 196  Q
    |||||||||||||||||| ||||||||||||||    
T  10588106 aaaggatgttataattagggacggagggagtag 10588074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 10602218 - 10602138
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||||||||||| ||| ||||||| ||||||||||| | |  ||| ||| |||||| | |||| ||||||||||| |||||    
T  10602218 acttttcatatttcaaaacaaattagtagtattaattaagagtatgtttaggaaaaaaataatgaatgcatctagtaattt 10602138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 31893470 - 31893522
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttg 94  Q
    |||||||||||||  ||||||||| |||||| |||||||| ||| ||||||||    
T  31893470 ttaacttttcataaaccaagacaacttggtaatattaatagggggtatatttg 31893522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 40411354 - 40411270
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||||| ||||||||  |  || ||||||| |||| ||| |||  ||||| | |||||||||||||||| ||||||    
T  40411354 ttaacttttcatatttcaagacaagataataatattaattaggggtatgtttaagaaaaaaataataaatgcatctagtaatttg 40411270  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 4524027 - 4523906
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgttta 144  Q
    |||| ||||||||||||| || | | | ||||||||||||| |||| |||| |||||||| |||||||||||||| ||||||||  | ||||||| ||||    
T  4524027 acttatcatattccaagataattagatggtattaataaggggtataattggaaaaagagtgataaatgcatctagtaatttgtagcgagtcttatattta 4523928  T
Q  145 gtgacaaccaattttttgtaaa 166  Q
    | |||||||| | |||||||||    
T  4523927 gggacaaccattgttttgtaaa 4523906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 35569012 - 35568931
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||||| |||||| |||| |||| ||| ||| |||||| | |||||||||||| ||| ||||||    
T  35569012 acttttcatatttcaagacaaattagtagtactaattaggggtatgtttaggaaaataataataaatgcatttagtaatttg 35568931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 7736077 - 7736183
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgttta 144  Q
    |||||||||||| ||||| || || | ||||||||| |||||||| ||| |||||| | |||||||||| ||||| |||||| | ||||  |||| ||||    
T  7736077 acttttcatatttcaagataagttagcagtattaattagggatatgtttaggaaaaaaataataaatgcgtctagtaatttgaaaaggggtttatattta 7736176  T
Q  145 gtgacaa 151  Q
    | |||||    
T  7736177 gggacaa 7736183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 29866286 - 29866360
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctag 119  Q
    |||||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | | ||||||||||||||    
T  29866286 acttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaaaaattataaatgcatctag 29866360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 16122 - 16041
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||| ||| |||||||| || ||||||||||  |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  16122 acttttcacatttcaagacaagttagtagtattaaccaggggtatgtttaggaaaataataataaatgcatctagtaatttg 16041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 8717966 - 8717885
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| |||||||| || ||| ||||||| |||| ||| ||| |||||| | |||||| ||||||||| ||||||    
T  8717966 acttttcatatttcaagacaagttcgtattattaattaggggtatgtttaggaaaaaaataataagtgcatctagtaatttg 8717885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 35715392 - 35715469
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaa 122  Q
    |||||||||||| | | ||||||| |  |||||||| |||||||||||||| |||| | |||||| ||||||||||||    
T  35715392 acttttcatatttcgatacaaatttgaggtattaatgagggatatatttggaaaaataataataagtgcatctagaaa 35715469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 39690485 - 39690412
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  39690485 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 39690412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 4738727 - 4738806
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||||||||||| |||||||| || ||||||||| | |||| ||| ||| |||||| | |||||||||||||||| |||||    
T  4738727 acttttcatatttcaagacaagttagtagtattagttaggggtatgtttaggaaaa-attaataaatgcatctagtaattt 4738806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 27143925 - 27143973
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatattt 93  Q
    ||||||||| ||| |||||||||| ||||||| ||||||||||||||||    
T  27143925 acttttcatcttctaagacaaattcgtagtataaataagggatatattt 27143973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 14811272 - 14811189
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    |||||||||  |||||||||||| ||||||||||||||| || |||||  |||  |||||  ||||||||||  ||||||||||    
T  14811272 ttttcatatatcaagacaaattgatagtattaataaggggtaaatttgaaaaacaagtaaccaatgcatctaagaatttgtata 14811189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 3631117 - 3631044
Alignment:
Q  52 atattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||| ||||||||| ||||||||||||| |||| ||| ||| |||||| | |||||||| ||||||| ||||||    
T  3631117 atatttcaagacaaaatggtagtattaattaggggtatgtttaggaaaa-aataataaatacatctagtaatttg 3631044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 10205461 - 10205519
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaa 100  Q
    |||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||| ||||    
T  10205461 ttaacttttcatctttcaagataaattagtagtattaataaggggtatgtttggaaaaa 10205519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 25017681 - 25017611
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcat 115  Q
    ||||||||||||  ||||||| ||  |||||||||| |||| ||||||| |||||| | ||||||||||||    
T  25017681 acttttcatattttaagacaagttaatagtattaattaggggtatatttaggaaaaaaataataaatgcat 25017611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 32108160 - 32108074
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    ||||||||||||||| ||||  | |||| || ||||||| ||  || ||||||| ||||||||||||| ||||| || |||||||||    
T  32108160 ttaacttttcatatttcaaggtatattgataatattaatgagaaatgtatttggaaaaagagtaataattgcatttaaaaatttgta 32108074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 3559034 - 3558953
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||| || || |||||||| || | || ||| ||| |||||| | |||||||||||||||| ||||||    
T  3559034 acttttcatatttcaagataagttagtagtatttattaagggtatgtttaggaaaaaaataataaatgcatctagtaatttg 3558953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 5845273 - 5845346
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||||| ||| |||| || ||||||||||| |||  ||| ||| |||||| | |||||||||||||||    
T  5845273 acttttcatatttcaatacaagttagtagtattaattaggagtatgtttaggaaaaaattaataaatgcatcta 5845346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 21912225 - 21912298
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||| | ||||||    
T  21912225 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatcttgtaatttg 21912298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 36347604 - 36347535
Alignment:
Q  49 ttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||| ||| |||||||| || ||| ||||||| |||||||| ||| ||||||  ||||||||||||||||    
T  36347604 ttcacatttcaagacaagttagtaatattaattagggatatgtttaggaaaaaggtaataaatgcatcta 36347535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 38550692 - 38550764
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctag 119  Q
    |||||||||||||||  ||||| ||||||||||| |||| ||| | ||  |||| | ||||||||||||||||    
T  38550692 ttttcatattccaaggtaaattagtagtattaattagggttatgtctgaaaaaataataataaatgcatctag 38550764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 34024008 - 34023899
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttatgt 141  Q
    ||||||||| ||||  |||||||||||||||||||||||||||  ||||||| |  |||||| ||| ||| |||||| ||||||||||| | |||||| |    
T  34024008 ttaacttttgatatatcaagacaaattggtagtattaataaggagtatatttagagaaagaggaatcaatacatctaaaaatttgtatatgatcttatat 34023909  T
Q  142 ttagtgacaa 151  Q
    |||| |||||    
T  34023908 ttagggacaa 34023899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 3831143 - 3831224
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | | ||||||||| |||||||| ||| |||||| | |||||||||||||||| ||||||    
T  3831143 acttttcatatttcaagacaagatagaagtattaattagggatatgtttaggaaaaaattaataaatgcatctagtaatttg 3831224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 23982599 - 23982518
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||| || || ||||||||||| |||||||| ||| |||||| | ||||||||| |||||| ||||||    
T  23982599 acttttcatatttcaagataagttagtagtattaattagggatatgtttaggaaaataataataaatgtatctagcaatttg 23982518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 49877950 - 49877865
Alignment:
Q  42 ttaacttttcatattccaagacaaattggta-gtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||||| |||||| | ||||||| ||||||||||||| |||||| |  ||||||||||| ||| |||||| |||||||    
T  49877950 ttaacttttcatatgccaagatagattggtaagtattaataaggggtatattagaaaaaagagtaatcaatacatctaaaaatttg 49877865  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 328444 - 328522
Alignment:
Q  48 tttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||| ||||  | |||| || ||||||| |||| | ||||||| ||||||||||||||||| ||||||||||||    
T  328444 tttcatatttcaaggtatattgataatattaatgaggggtgtatttggaaaaagagtaataaatgcgtctagaaatttg 328522  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 897274 - 897340
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaat 111  Q
    |||||||||||||||||| |||| | ||||||||||||  | | ||||||| |||||||||||||||    
T  897274 acttttcatattccaagataaatagatagtattaataaatggtgtatttggaaaaagagtaataaat 897340  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 5085096 - 5085015
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||| ||  | ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  5085096 acttttcatatttcaagagaagatagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatctagtaatttg 5085015  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 8740303 - 8740381
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 128  Q
    |||||||||||||||| || ||||| |||||||||| || |||| |||| ||| |||||| |||||||||||||||||||||    
T  8740303 ttttcatattccaagataa-ttggtggtattaataacgg-tataattgg-aaatgagtaagaaatgcatctagaaatttgta 8740381  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 15512780 - 15512707
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  15512780 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 15512707  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 28948963 - 28948890
Alignment:
Q  53 tattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||| ||||||||||| |||| |||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  28948963 tatttcaagacaaattagtaggattaattaggggtatgtttaggaaaataataataaatgcatctagtaatttg 28948890  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 33231936 - 33232017
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | || |||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  33231936 acttttcatatttcaagacaagatagtggtattaattaggggtatgtttaggaaaaaaataataaatgcatctagtaatttg 33232017  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 34696890 - 34696809
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||| |||| ||||||||| | ||||||||||| ||||| || ||| |||||| | |||||||| ||||||| ||||||    
T  34696890 acttttcctatttcaagacaaaatagtagtattaattagggacatgtttaggaaaaaaataataaatacatctagtaatttg 34696809  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 44652868 - 44652795
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatcta 118  Q
    |||||||||||| ||| |||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||||||    
T  44652868 acttttcatatttcaaaacaagttagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatcta 44652795  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 48721875 - 48721795
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||  | ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  48721875 acttttcatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaa-aataataaatgcatctagtaatttg 48721795  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 17426731 - 17426648
Alignment:
Q  46 cttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    ||||| |||||||||  ||| || || |||||||| |||||||||||| |||||| | |||||||||||||||  ||||||||||    
T  17426731 ctttttatattccaatgcaatttagttgtattaattagggatatatttaggaaaa-aataataaatgcatctaataatttgtata 17426648  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 27578705 - 27578777
Alignment:
Q  67 ttggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtatagggtcttat 139  Q
    |||||||||| ||||| || |||||||   ||||||||||| ||||||||||| |||||||||| | ||||||    
T  27578705 ttggtagtatcaataaagggtatatttaaaaaaagagtaatcaatgcatctagtaatttgtatatgatcttat 27578777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 34012580 - 34012662
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    ||||||||||||||| ||||||||  | ||||||||||| | || ||| ||| |||||| | |||||||||||||||| |||||    
T  34012580 ttaacttttcatatttcaagacaagatagtagtattaattaagggtatgtttaggaaaa-aataataaatgcatctagtaattt 34012662  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 35377546 - 35377629
Alignment:
Q  44 aacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 130  Q
    |||||||||||| ||||||||||||  || ||||||||| ||  || || || ||||||||||| |||||||||| |||||||||||    
T  35377546 aacttttcatataccaagacaaatt--ta-tattaataaagggcatgttaggaaaaagagtaatcaatgcatctaaaaatttgtata 35377629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 41620290 - 41620369
Alignment:
Q  30 atacattgagtcttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataa 109  Q
    ||||||| ||| |||| ||||||||| |||| |||||| |||| ||||||||||| ||||||| |   ||||||||||||    
T  41620290 atacatttagtgttaatttttcatataccaaaacaaatcggtaatattaataaggaatatattggtagaaagagtaataa 41620369  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 46732967 - 46732897
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcat 115  Q
    |||||||||||| ||||||||||| |||||| |||| |||| ||| ||| || ||| | ||||||||||||    
T  46732967 acttttcatatttcaagacaaattagtagtaataattaggggtatgtttagggaaaaaataataaatgcat 46732897  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 24248780 - 24248744
Alignment:
Q  89 tatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  24248780 tatttggaaaaagagtaataaatgcatctaaaaattt 24248744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 36085063 - 36085147
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    ||||||||||||||| | ||||||  |  |||||||||| |||| ||| |||  ||||| | |||||||||||||||| ||||||    
T  36085063 ttaacttttcatatttcgagacaagataatagtattaattaggggtatgtttaagaaaaaaataataaatgcatctagtaatttg 36085147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 51390544 - 51390465
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaattt 125  Q
    |||||||||||| |||||||| || ||||| ||||| | || ||| ||| |||||| | |||||||||||||||| |||||    
T  51390544 acttttcatatttcaagacaagttagtagttttaattaagggtatgtttaggaaaa-aataataaatgcatctagtaattt 51390465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 52301218 - 52301286
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaa-taagggatatatttgggaaaagagtaataaatg 112  Q
    |||||||| ||||||| ||||||||||||||| || |||| || |||||||| |||||| | |||||||    
T  52301218 acttttcacattccaaaacaaattggtagtataaagtaagagacatatttggaaaaagaatgataaatg 52301286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1091 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 1921 - 1840
Alignment:
Q  45 acttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||||| ||||||||||| ||||||||||| |||| ||| ||| ||||||   |||||||||||||||| ||||||    
T  1921 acttttcatattgcaagacaaattagtagtattaattaggggtatgtttaggaaaaacataataaatgcatctagtaatttg 1840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 38482 - 38404
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||| |||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||||||| ||||||    
T  38482 ttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaa-aataataaatgcatctagtaatttg 38404  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 93461 - 93426
Alignment:
Q  42 ttaacttttcatattccaagacaaattggtagtatt 77  Q
    |||||||||||||| |||||||||||||||||||||    
T  93461 ttaacttttcatataccaagacaaattggtagtatt 93426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 92851 - 92797
Alignment:
Q  97 aaaagagtaataaatgcatctagaaatttgtatagggtcttatgtttagtgacaa 151  Q
    ||||||||||| ||||||||||||||| |||| | | |||||||||||| |||||    
T  92851 aaaagagtaatcaatgcatctagaaatatgtagatgatcttatgtttagagacaa 92797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 49236 - 49314
Alignment:
Q  47 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttg 126  Q
    |||||||||| ||| ||||||| ||||||||||| |||| ||| ||| |||||| | |||||||| ||||||| ||||||    
T  49236 ttttcatatttcaaaacaaattagtagtattaattaggggtatgtttaggaaaa-aataataaatacatctagtaatttg 49314  T

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Target: scaffold0533 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 3385 - 3442
Alignment:
Q  72 agtattaataagggatatatttgggaaaa-gagtaataaatgcatctagaaatttgta 128  Q
    |||||||||||||| ||| ||||| |||| || |||||||||||||||| ||||||||    
T  3385 agtattaataagggctatttttggaaaaaagaataataaatgcatctagtaatttgta 3442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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