View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20024_low_9 (Length: 434)
Name: NF20024_low_9
Description: NF20024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20024_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 165 - 419
Target Start/End: Complemental strand, 32959561 - 32959300
Alignment:
| Q |
165 |
caatttaatacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcaaaatca------cagtgagtc |
258 |
Q |
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| T |
32959561 |
caatttaatacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcagaatcagaatcacagtgagtc |
32959462 |
T |
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| Q |
259 |
gtcgtaatttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaactcgtggtgattcttatcaagcacttagac |
358 |
Q |
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| T |
32959461 |
gtcgtaatttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaactcgcggtgattcttatcaagtacttagac |
32959362 |
T |
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| Q |
359 |
atagacaagtgaaagatg-gagaaaagtagaagtgtgattggatgtagaagagagttgaaaa |
419 |
Q |
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| T |
32959361 |
atagacaagtgaaagatgagagagaagtagaagtgtgattggatgtagaagagagttgaaaa |
32959300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 32959702 - 32959587
Alignment:
| Q |
7 |
cttgtaataatgattctgttttctgacctgaatgcctgattcaaattggtcagtccattcaggaggaagctgcaattaataccaaaagaggatgaaatca |
106 |
Q |
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| T |
32959702 |
cttgtaataatgattctgttttctgacctgaatgcctgattcaaactggtcagtccattcaggaggaagctgcaattaataccaaaagaggatgaaatca |
32959603 |
T |
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| Q |
107 |
atcatcatcaaaataa |
122 |
Q |
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| T |
32959602 |
atcatcatcataataa |
32959587 |
T |
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