View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_high_12 (Length: 319)
Name: NF20025_high_12
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_high_12 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 48635453 - 48635733
Alignment:
| Q |
11 |
atacttatacactatgaagcacaaacacacacatggacactgacatgtcgacacttataataatttgggaaaataacgtaactcacatgtgttgatgtca |
110 |
Q |
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| T |
48635453 |
atacttatacactatgaagcacatacacacacatggacactgacatgtggacacctataataatttgagaaaataacgtaactcacatgtgttgatgtca |
48635552 |
T |
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| Q |
111 |
gacatcggacacatcttatattagaagtgtcggtgctacaaagattattatataaaatt-aagaaattaagagcagacaatgaagtaagttagtactaac |
209 |
Q |
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| T |
48635553 |
gacatcggacacatcttatattagaagtgtcggtgctacaaagattattatataaaattaaaaaaattaagagcagacaatgaagtaagttagtgctaac |
48635652 |
T |
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| Q |
210 |
catgaagaggccatggagaagcagaactggaggacctcgttgttgttgttgagcagaataacgaatacgcgcagaagaaga |
290 |
Q |
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| T |
48635653 |
catgaagaggccatggagaagcagaactggaggacctcgttgttgttgttgagcagaataacgaatacgcgcagaagaaga |
48635733 |
T |
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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 8647 - 8690
Alignment:
| Q |
41 |
acatggacactgacatgtcgacacttataataatttgggaaaat |
84 |
Q |
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| T |
8647 |
acatggacactgacacgtcgacacttctaataatttaggaaaat |
8690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 33135393 - 33135435
Alignment:
| Q |
45 |
ggacactgacatgtcgacacttataataatttgggaaaataac |
87 |
Q |
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| T |
33135393 |
ggacactgacatgtcgactctgataataatttgtgaaaataac |
33135435 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 48358676 - 48358717
Alignment:
| Q |
112 |
acatcggacacatcttatattagaagtgtcggtgctacaaag |
153 |
Q |
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| T |
48358676 |
acatcggacacacctttgattagaagtgtcggtgctacaaag |
48358717 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 6546293 - 6546325
Alignment:
| Q |
22 |
ctatgaagcacaaacacacacatggacactgac |
54 |
Q |
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| T |
6546293 |
ctatgaagcacaaacacagacatggacactgac |
6546325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 43093496 - 43093448
Alignment:
| Q |
105 |
atgtcagacatcggacacatcttatattagaagtgtcggtgctacaaag |
153 |
Q |
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| T |
43093496 |
atgtcggacatcggacacgacttctattagaagtgttggtgctacaaag |
43093448 |
T |
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