View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_high_20 (Length: 250)
Name: NF20025_high_20
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 12295347 - 12295244
Alignment:
| Q |
144 |
tgttgatagataagttctgctatggaatcctaaacaagtattttgcatttctaccttcttttcttttaccaaaaataacaaataaatgagacttcttctc |
243 |
Q |
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| T |
12295347 |
tgttgatagataagttctggtatggaatcctaaacaagtattttgcatttctaccttcttttcttttaccaaaaataacaaataaatgagacttcttctc |
12295248 |
T |
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| Q |
244 |
actc |
247 |
Q |
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|||| |
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| T |
12295247 |
actc |
12295244 |
T |
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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12295485 - 12295425
Alignment:
| Q |
1 |
atcatttgtatgttatgtgagactctgcataataaaattgtactaatcagaatatacattg |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12295485 |
atcatttgtatgttatgtgagactctgcataataaaattgtactaatcagaatatacattg |
12295425 |
T |
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