View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20025_high_24 (Length: 239)

Name: NF20025_high_24
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20025_high_24
NF20025_high_24
[»] chr2 (3 HSPs)
chr2 (32-116)||(33834311-33834394)
chr2 (32-103)||(2765060-2765130)
chr2 (206-239)||(1694625-1694658)
[»] chr4 (4 HSPs)
chr4 (32-100)||(55774325-55774392)
chr4 (32-100)||(55838534-55838601)
chr4 (199-233)||(45784175-45784209)
chr4 (61-95)||(48095386-48095420)
[»] chr5 (3 HSPs)
chr5 (34-99)||(7037006-7037070)
chr5 (31-100)||(18515343-18515411)
chr5 (8-98)||(9439187-9439273)
[»] chr3 (1 HSPs)
chr3 (31-116)||(21481576-21481659)
[»] chr8 (2 HSPs)
chr8 (32-95)||(41877064-41877126)
chr8 (206-239)||(42319859-42319892)
[»] chr6 (1 HSPs)
chr6 (206-239)||(31661225-31661258)


Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 33834311 - 33834394
Alignment:
Q  32 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaactcaatgaacatttttg 116  Q
    ||||| ||||||||| ||||||||||| ||| |||||||||||||||||||  |||||||||||||||  | |||| ||||||||    
T  33834311 tataaccatattttagattatataatccgaa-cacatccaaactgtgttcgggttatataatccaaaatcccatgatcatttttg 33834394  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 2765060 - 2765130
Alignment:
Q  32 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaactca 103  Q
    |||||||||||||   ||||||||||| ||| |||||||||||| |||||  ||||||||||| ||||||||    
T  2765060 tataagcatatttcggattatataatcagaa-cacatccaaactatgttcagattatataatctaaaactca 2765130  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 1694625 - 1694658
Alignment:
Q  206 ttttgatctctataaatatctcaaatttcgtttt 239  Q
    |||||||||||||||||||||||||||| |||||    
T  1694625 ttttgatctctataaatatctcaaatttagtttt 1694658  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 55774392 - 55774325
Alignment:
Q  32 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaac 100  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| | ||||||||||||||||||| ||||    
T  55774392 tataagcatattttagattatataaacc-aaacacatccaaattatgttcgaattatataatccgaaac 55774325  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 55838601 - 55838534
Alignment:
Q  32 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaac 100  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| | ||||||||||||||||||| ||||    
T  55838601 tataagcatattttagattatataaacc-aaacacatccaaattatgttcgaattatataatccgaaac 55838534  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 45784209 - 45784175
Alignment:
Q  199 aataaagttttgatctctataaatatctcaaattt 233  Q
    ||||| |||||||||||||||||||||||||||||    
T  45784209 aataaggttttgatctctataaatatctcaaattt 45784175  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 48095386 - 48095420
Alignment:
Q  61 aaacacatccaaactgtgttcgaattatataatcc 95  Q
    |||||||||||||||||||||||||| ||||||||    
T  48095386 aaacacatccaaactgtgttcgaattttataatcc 48095420  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 7037006 - 7037070
Alignment:
Q  34 taagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaa 99  Q
    |||||||| || |||||||||||| | |||| |||||||||| |||||||||||||||||| ||||    
T  7037006 taagcatacttcaaattatataat-tcaaacccatccaaactatgttcgaattatataatctaaaa 7037070  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 18515343 - 18515411
Alignment:
Q  31 gtataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaac 100  Q
    ||||||||| |||| | ||||||||||| ||| |||||||||||| |||||  |||||||||||||||||    
T  18515343 gtataagcacatttcagattatataatccgaa-cacatccaaactctgttcagattatataatccaaaac 18515411  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 9439273 - 9439187
Alignment:
Q  8 agattttgattgatgcttaacaggtataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaa 98  Q
    |||||||||||||||||||    |||||| |||||||   ||||||||||||||| || ||||||| ||||||| ||||||||||| ||||    
T  9439273 agattttgattgatgcttat---gtataaacatatttcggattatataatctgaa-catatccaaaatgtgttcaaattatataattcaaa 9439187  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 21481576 - 21481659
Alignment:
Q  31 gtataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaactcaatgaacatttttg 116  Q
    |||||||||||||| | |||||||| || ||| |||||||||| |||||||||||| |||||||||||| || | || ||||||||    
T  21481576 gtataagcatatttcagattatatagtccgaa-cacatccaaa-tgtgttcgaattttataatccaaaattctaagatcatttttg 21481659  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 41877064 - 41877126
Alignment:
Q  32 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatcc 95  Q
    ||||||||||||| ||||||||||||| | || ||||||||| |||||| | ||||||||||||    
T  41877064 tataagcatatttcaaattatataatccg-aatacatccaaattgtgttgggattatataatcc 41877126  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 42319892 - 42319859
Alignment:
Q  206 ttttgatctctataaatatctcaaatttcgtttt 239  Q
    ||||||||||||||||||| ||||||||||||||    
T  42319892 ttttgatctctataaatatatcaaatttcgtttt 42319859  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 31661225 - 31661258
Alignment:
Q  206 ttttgatctctataaatatctcaaatttcgtttt 239  Q
    ||||||||||||||||||| ||||||||||||||    
T  31661225 ttttgatctctataaatatatcaaatttcgtttt 31661258  T

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