View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_high_26 (Length: 238)
Name: NF20025_high_26
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 12730978 - 12730833
Alignment:
| Q |
87 |
tcttttccaacatttatatgtcgaactttagaatggaccgacactcgaacgactttaattt-tttaagtataggatgaatgaagttcctttaaattgaag |
185 |
Q |
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| T |
12730978 |
tcttttccaacatttatatgtcgaactttagaatggaccgacactcgaacgactttaatttctttaagtataggaggaatgaagttcctttaaattgaag |
12730879 |
T |
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| Q |
186 |
aagttgacgatcccattatggagggctaaaatgagcataatgacta |
231 |
Q |
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| T |
12730878 |
aagttgacgatcccattatggagggctaaaatgagcataatgacta |
12730833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 12731173 - 12731105
Alignment:
| Q |
22 |
ctcaccacaatacatcctctattttttagcgcctttggtgccttagcgttcttggttcattttattctt |
90 |
Q |
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| T |
12731173 |
ctcaccacaatacatcctctattttttagcgcctatggtgacttagcattctcggttcatttcattctt |
12731105 |
T |
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